Cow genome map
| Conread name: | rsin05_g3.y1 |
| Conread position: | 1-400 |
| Cow position: | chr24:27153922-27153508 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 116 |
| Conread position: | 1-485 |
| Cow position: | chr24:6666076-6665585 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 98 |
| Conread position: | 1-488 |
| Cow position: | chr24:27905834-27906340 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 90 |
| Conread position: | 1-488 |
| Cow position: | chr24:35568573-35569086 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 137 |
| Conread position: | 1-488 |
| Cow position: | chr24:39681261-39681756 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 152 |
| Conread position: | 3-488 |
| Cow position: | chr24:27684043-27683537 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 194 |
| Conread position: | 56-470 |
| Cow position: | chr24:28721357-28721771 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 284 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 161, 65 |
| Conread position: | 61-485 |
| Cow position: | chr24:27845046-27844627 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 75 |
| Conread position: | 61-487 |
| Cow position: | chr24:11118761-11119186 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 297 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 16, 71 |
| Conread position: | 66-452 |
| Cow position: | chr24:7575736-7575353 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 267 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 11, 37 |
| Conread position: | 66-453 |
| Cow position: | chr24:5652486-5652117 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 11, 68 |
| Conread position: | 66-486 |
| Cow position: | chr24:31811667-31812084 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 70 |
| Conread position: | 67-451 |
| Cow position: | chr24:28067241-28067621 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 96, 70 |
| Conread position: | 67-482 |
| Cow position: | chr24:25269517-25269092 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 301 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 100, 68 |
| Conread position: | 68-487 |
| Cow position: | chr24:11886646-11887061 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 39 |
| Conread position: | 69-294 |
| Cow position: | chr24:25424491-25424712 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-301 |
| Cow position: | chr24:43200835-43200604 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-332 |
| Cow position: | chr24:31758487-31758235 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 151, 32 |
| Conread position: | 69-357 |
| Cow position: | chr24:15372601-15372892 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-377 |
| Cow position: | chr24:33291690-33291391 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 8, 44 |
| Conread position: | 69-439 |
| Cow position: | chr24:4616264-4615899 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 258 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 10, 72 |
| Conread position: | 69-451 |
| Cow position: | chr24:39217143-39216760 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 260 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-455 |
| Cow position: | chr24:6341644-6342039 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 293 |
| Conread position: | 69-470 |
| Cow position: | chr24:28554071-28553667 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 69-478 |
| Cow position: | chr24:28723910-28724331 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 294 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 8, 187 |
| Conread position: | 69-485 |
| Cow position: | chr24:24250206-24250621 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-488 |
| Cow position: | chr24:5849929-5849496 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 62 |
| Conread position: | 69-488 |
| Cow position: | chr24:18374275-18374680 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 293 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 7, 67 |
| Conread position: | 70-302 |
| Cow position: | chr24:39955803-39955558 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 7, 68 |
| Conread position: | 70-451 |
| Cow position: | chr24:16483046-16482675 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 97, 63 |
| Conread position: | 70-453 |
| Cow position: | chr24:37856863-37856476 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 93, 111 |
| Conread position: | 70-488 |
| Cow position: | chr24:7001585-7001164 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 68 |
| Conread position: | 75-434 |
| Cow position: | chr24:29759855-29760206 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 52, 46 |
| Conread position: | 76-291 |
| Cow position: | chr24:19782600-19782821 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 91, 59 |
| Conread position: | 76-340 |
| Cow position: | chr24:16897355-16897087 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 87, 61 |
| Conread position: | 76-400 |
| Cow position: | chr24:16844845-16844518 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 77 |
| Conread position: | 76-419 |
| Cow position: | chr24:42938145-42937809 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 98, 41 |
| Conread position: | 76-487 |
| Cow position: | chr24:27720257-27719854 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 61 |
| Conread position: | 78-292 |
| Cow position: | chr24:41063279-41063497 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 28, 22 |
| Conread position: | 78-306 |
| Cow position: | chr24:39258635-39258863 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 78-347 |
| Cow position: | chr24:16996401-16996676 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 31, 24 |
| Conread position: | 78-382 |
| Cow position: | chr24:34761330-34761627 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 34, 24 |
| Conread position: | 78-424 |
| Cow position: | chr24:22047251-22046905 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 78-434 |
| Cow position: | chr24:24455217-24455581 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 255 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 71, 16 |
| Conread position: | 78-444 |
| Cow position: | chr24:17720602-17720232 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 253 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 78-448 |
| Cow position: | chr24:6067524-6067157 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 254 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 142, 59 |
| Conread position: | 78-451 |
| Cow position: | chr24:17188449-17188076 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 78-466 |
| Cow position: | chr24:39160049-39159670 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 59 |
| Conread position: | 78-486 |
| Cow position: | chr24:39238290-39238698 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 283 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 121, 59 |
| Conread position: | 79-287 |
| Cow position: | chr24:27632883-27633089 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 141, 15 |
| Conread position: | 79-367 |
| Cow position: | chr24:29360484-29360200 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 141, 55 |
| Conread position: | 79-458 |
| Cow position: | chr24:33239059-33238680 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 56 |
| Conread position: | 79-470 |
| Cow position: | chr24:43634925-43635318 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 270 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 102, 56 |
| Conread position: | 171-456 |
| Cow position: | chr24:26555413-26555698 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 173-348 |
| Cow position: | chr24:15617693-15617871 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 10, 162 |
| Conread position: | 314-477 |
| Cow position: | chr24:39258891-39259052 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 14, 90 |
Show alignments to all cow chromosomes.