Cow genome map
| Conread name: | rsin05_g3.y1 |
| Conread position: | 1-390 |
| Cow position: | chr25:32607096-32606689 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 31, 116 |
| Conread position: | 1-482 |
| Cow position: | chr25:17658036-17658530 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 152 |
| Conread position: | 1-487 |
| Cow position: | chr25:10012635-10012122 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 129 |
| Conread position: | 1-487 |
| Cow position: | chr25:23410076-23410587 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 148 |
| Conread position: | 2-342 |
| Cow position: | chr25:13429702-13429347 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 25, 137 |
| Conread position: | 3-303 |
| Cow position: | chr25:13941312-13940994 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 31, 132 |
| Conread position: | 12-477 |
| Cow position: | chr25:23672437-23671978 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 318 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 20, 96 |
| Conread position: | 60-454 |
| Cow position: | chr25:3992285-3992680 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 76 |
| Conread position: | 67-313 |
| Cow position: | chr25:2595490-2595737 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 43, 35 |
| Conread position: | 67-426 |
| Cow position: | chr25:24669118-24668762 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 100, 44 |
| Conread position: | 67-451 |
| Cow position: | chr25:17994789-17994406 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 35 |
| Conread position: | 67-488 |
| Cow position: | chr25:20394702-20395116 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 294 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 82, 73 |
| Conread position: | 69-282 |
| Cow position: | chr25:11929057-11928839 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 8, 68 |
| Conread position: | 69-295 |
| Cow position: | chr25:27535435-27535208 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 69-316 |
| Cow position: | chr25:40906772-40906525 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 69-367 |
| Cow position: | chr25:598837-599138 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 69-368 |
| Cow position: | chr25:21041325-21041621 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 69-434 |
| Cow position: | chr25:14960203-14959831 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 8, 32 |
| Conread position: | 69-448 |
| Cow position: | chr25:10407915-10407534 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 68 |
| Conread position: | 69-453 |
| Cow position: | chr25:36871362-36871746 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 70 |
| Conread position: | 69-470 |
| Cow position: | chr25:8572365-8571963 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 33 |
| Conread position: | 69-470 |
| Cow position: | chr25:35567380-35566979 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-473 |
| Cow position: | chr25:17682269-17681868 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 37, 32 |
| Conread position: | 69-488 |
| Cow position: | chr25:8120281-8120705 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 69 |
| Conread position: | 69-488 |
| Cow position: | chr25:12203973-12204394 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-488 |
| Cow position: | chr25:26756936-26757361 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 38 |
| Conread position: | 70-439 |
| Cow position: | chr25:5154978-5154610 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 97, 67 |
| Conread position: | 70-439 |
| Cow position: | chr25:15205678-15206045 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 114, 67 |
| Conread position: | 70-486 |
| Cow position: | chr25:6892021-6891606 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 300 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 7, 31 |
| Conread position: | 76-277 |
| Cow position: | chr25:18265699-18265906 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 85, 54 |
| Conread position: | 76-382 |
| Cow position: | chr25:15005718-15006021 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 223 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 111, 61 |
| Conread position: | 76-398 |
| Cow position: | chr25:40793551-40793882 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 87, 59 |
| Conread position: | 76-451 |
| Cow position: | chr25:9625328-9625696 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 48 |
| Conread position: | 76-459 |
| Cow position: | chr25:31586555-31586933 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 61 |
| Conread position: | 76-464 |
| Cow position: | chr25:22709061-22709437 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 87, 57 |
| Conread position: | 76-486 |
| Cow position: | chr25:11437290-11436888 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 61 |
| Conread position: | 76-488 |
| Cow position: | chr25:394864-395277 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 59 |
| Conread position: | 76-488 |
| Cow position: | chr25:13569660-13569246 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 292 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 87, 41 |
| Conread position: | 76-488 |
| Cow position: | chr25:27531753-27531350 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 266 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 230, 59 |
| Conread position: | 77-304 |
| Cow position: | chr25:35296269-35296041 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 91, 58 |
| Conread position: | 77-367 |
| Cow position: | chr25:32278516-32278226 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 33, 25 |
| Conread position: | 78-299 |
| Cow position: | chr25:17562584-17562804 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 141, 57 |
| Conread position: | 78-443 |
| Cow position: | chr25:9078327-9078693 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 91, 57 |
| Conread position: | 78-448 |
| Cow position: | chr25:38439675-38440044 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 28, 24 |
| Conread position: | 78-451 |
| Cow position: | chr25:15412540-15412913 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 23 |
| Conread position: | 79-329 |
| Cow position: | chr25:35077149-35076897 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 137, 114 |
| Conread position: | 79-426 |
| Cow position: | chr25:32700683-32700325 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 93, 58 |
| Conread position: | 81-459 |
| Cow position: | chr25:25866445-25866815 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 82, 56 |
| Conread position: | 81-488 |
| Cow position: | chr25:22314718-22315123 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 56 |
| Conread position: | 86-451 |
| Cow position: | chr25:8482791-8482425 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 252 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 101, 51 |
| Conread position: | 87-466 |
| Cow position: | chr25:11662290-11661918 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 51 |
Show alignments to all cow chromosomes.