Cow genome map
| Conread name: | rsin05_g3.y1 |
| Conread position: | 1-451 |
| Cow position: | chr27:20865994-20866455 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 42 |
| Conread position: | 1-458 |
| Cow position: | chr27:25885434-25885874 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 334 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 32, 146 |
| Conread position: | 1-465 |
| Cow position: | chr27:12282319-12282809 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 144 |
| Conread position: | 1-488 |
| Cow position: | chr27:30447720-30447207 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 350 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 20, 152 |
| Conread position: | 2-302 |
| Cow position: | chr27:23658200-23658516 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 30, 152 |
| Conread position: | 2-303 |
| Cow position: | chr27:17923544-17923868 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 30, 119 |
| Conread position: | 2-311 |
| Cow position: | chr27:16428291-16428625 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 24, 294 |
| Conread position: | 19-483 |
| Cow position: | chr27:15319952-15319484 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 120 |
| Conread position: | 42-462 |
| Cow position: | chr27:24937837-24938259 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 299 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 23, 99 |
| Conread position: | 59-488 |
| Cow position: | chr27:14669920-14670354 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 80 |
| Conread position: | 60-392 |
| Cow position: | chr27:1293959-1294293 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 17, 43 |
| Conread position: | 61-416 |
| Cow position: | chr27:15632857-15632502 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 248 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 49, 42 |
| Conread position: | 61-454 |
| Cow position: | chr27:24009469-24009866 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 280 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 9, 76 |
| Conread position: | 61-470 |
| Cow position: | chr27:21349290-21349695 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 77 |
| Conread position: | 64-438 |
| Cow position: | chr27:15349350-15349722 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 13, 74 |
| Conread position: | 67-453 |
| Cow position: | chr27:525610-525215 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 99, 66 |
| Conread position: | 69-300 |
| Cow position: | chr27:6620644-6620417 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 37, 33 |
| Conread position: | 69-306 |
| Cow position: | chr27:27527757-27527994 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-386 |
| Cow position: | chr27:14381157-14381474 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-388 |
| Cow position: | chr27:26785532-26785849 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 226 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 8, 68 |
| Conread position: | 69-417 |
| Cow position: | chr27:3729858-3730211 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 8, 70 |
| Conread position: | 69-449 |
| Cow position: | chr27:23128902-23128533 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-450 |
| Cow position: | chr27:28106682-28107062 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 53 |
| Conread position: | 69-457 |
| Cow position: | chr27:1768184-1768562 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 64 |
| Conread position: | 69-458 |
| Cow position: | chr27:7958386-7958769 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-460 |
| Cow position: | chr27:11693287-11693674 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 33 |
| Conread position: | 69-470 |
| Cow position: | chr27:23472703-23472304 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-470 |
| Cow position: | chr27:30583194-30582791 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-478 |
| Cow position: | chr27:25809073-25809473 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 282 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 69-488 |
| Cow position: | chr27:13876175-13875761 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 43 |
| Conread position: | 69-488 |
| Cow position: | chr27:22418317-22418737 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 70-443 |
| Cow position: | chr27:9436507-9436891 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 53, 66 |
| Conread position: | 73-488 |
| Cow position: | chr27:30177130-30177544 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 37, 30 |
| Conread position: | 76-325 |
| Cow position: | chr27:8274972-8274730 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 55, 85 |
| Conread position: | 76-335 |
| Cow position: | chr27:5423939-5424203 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 91, 59 |
| Conread position: | 76-400 |
| Cow position: | chr27:12191001-12191331 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 61 |
| Conread position: | 76-413 |
| Cow position: | chr27:28293619-28293279 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 87, 58 |
| Conread position: | 76-451 |
| Cow position: | chr27:20065921-20066286 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 263 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 30, 25 |
| Conread position: | 76-458 |
| Cow position: | chr27:21408108-21408492 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 263 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 43, 59 |
| Conread position: | 76-460 |
| Cow position: | chr27:27064003-27064381 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 259 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 123, 61 |
| Conread position: | 76-487 |
| Cow position: | chr27:27049476-27049877 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 73, 91 |
| Conread position: | 76-488 |
| Cow position: | chr27:19388468-19388044 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 61 |
| Conread position: | 77-470 |
| Cow position: | chr27:20828262-20828658 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 270 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 86, 58 |
| Conread position: | 78-470 |
| Cow position: | chr27:2332231-2332620 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 78-483 |
| Cow position: | chr27:27867239-27867661 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 58 |
| Conread position: | 80-448 |
| Cow position: | chr27:15508989-15509361 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 83, 59 |
| Conread position: | 82-296 |
| Cow position: | chr27:30365636-30365419 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 81, 55 |
| Conread position: | 82-404 |
| Cow position: | chr27:22107819-22108147 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 81, 53 |
| Conread position: | 82-451 |
| Cow position: | chr27:22549354-22549713 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 256 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 138, 50 |
| Conread position: | 140-289 |
| Cow position: | chr27:25277554-25277396 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 26, 156 |
| Conread position: | 140-329 |
| Cow position: | chr27:11355864-11356049 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 41, 8 |
Show alignments to all cow chromosomes.