Cow genome map
| Conread name: | rsin05_g3.y1 |
| Conread position: | 1-348 |
| Cow position: | chr28:19961308-19961683 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 31, 121 |
| Conread position: | 1-372 |
| Cow position: | chr28:12081247-12080850 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 35, 134 |
| Conread position: | 1-420 |
| Cow position: | chr28:16215457-16215029 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 107 |
| Conread position: | 1-447 |
| Cow position: | chr28:17599297-17598830 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 326 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 57, 33 |
| Conread position: | 1-470 |
| Cow position: | chr28:7745763-7746258 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 120 |
| Conread position: | 1-487 |
| Cow position: | chr28:11356506-11355992 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 153 |
| Conread position: | 6-488 |
| Cow position: | chr28:34208151-34208638 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 31 |
| Conread position: | 54-466 |
| Cow position: | chr28:4070460-4070875 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 13, 86 |
| Conread position: | 57-434 |
| Cow position: | chr28:23254287-23253923 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 257 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 20, 79 |
| Conread position: | 59-488 |
| Cow position: | chr28:11427033-11426610 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 43 |
| Conread position: | 66-485 |
| Cow position: | chr28:29392509-29392935 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 73 |
| Conread position: | 66-488 |
| Cow position: | chr28:11451965-11451531 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 72 |
| Conread position: | 67-427 |
| Cow position: | chr28:24318279-24317915 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 100, 32 |
| Conread position: | 67-445 |
| Cow position: | chr28:10867414-10867799 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 67-454 |
| Cow position: | chr28:2825785-2826159 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 34, 43 |
| Conread position: | 67-458 |
| Cow position: | chr28:480908-480520 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 43, 34 |
| Conread position: | 67-461 |
| Cow position: | chr28:15609195-15609584 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 111, 66 |
| Conread position: | 68-461 |
| Cow position: | chr28:17762163-17762563 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 211 |
| Conread position: | 68-466 |
| Cow position: | chr28:25399396-25399786 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 280 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 98, 61 |
| Conread position: | 68-488 |
| Cow position: | chr28:34151029-34150595 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 66 |
| Conread position: | 69-284 |
| Cow position: | chr28:3068657-3068878 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 69-289 |
| Cow position: | chr28:13865313-13865537 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 8, 72 |
| Conread position: | 69-290 |
| Cow position: | chr28:27428230-27428456 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 8, 104 |
| Conread position: | 69-293 |
| Cow position: | chr28:28076957-28076727 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 8, 53 |
| Conread position: | 69-294 |
| Cow position: | chr28:11710188-11709963 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-400 |
| Cow position: | chr28:4535993-4536314 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-427 |
| Cow position: | chr28:17744574-17744210 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 8, 72 |
| Conread position: | 69-458 |
| Cow position: | chr28:17316376-17316761 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 70 |
| Conread position: | 69-470 |
| Cow position: | chr28:5805030-5805427 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 33 |
| Conread position: | 69-470 |
| Cow position: | chr28:5941254-5941657 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-483 |
| Cow position: | chr28:6577166-6577573 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 289 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 8, 66 |
| Conread position: | 69-485 |
| Cow position: | chr28:8371994-8372397 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 62 |
| Conread position: | 69-485 |
| Cow position: | chr28:15935129-15934723 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 40, 32 |
| Conread position: | 69-486 |
| Cow position: | chr28:11827005-11827423 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 13 |
| Conread position: | 69-488 |
| Cow position: | chr28:3914222-3914643 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 69-488 |
| Cow position: | chr28:4282979-4282558 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 68 |
| Conread position: | 69-488 |
| Cow position: | chr28:7864842-7865256 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 65 |
| Conread position: | 69-488 |
| Cow position: | chr28:13693249-13693683 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 70-311 |
| Cow position: | chr28:22612417-22612651 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 149, 18 |
| Conread position: | 70-314 |
| Cow position: | chr28:12156447-12156692 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 7, 33 |
| Conread position: | 70-348 |
| Cow position: | chr28:20942191-20941921 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 149, 56 |
| Conread position: | 70-434 |
| Cow position: | chr28:4156824-4157182 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 105, 65 |
| Conread position: | 70-455 |
| Cow position: | chr28:8615913-8615544 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 95, 63 |
| Conread position: | 70-468 |
| Cow position: | chr28:7697489-7697096 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 32 |
| Conread position: | 75-307 |
| Cow position: | chr28:1537200-1537431 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 124, 62 |
| Conread position: | 76-290 |
| Cow position: | chr28:32365484-32365701 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 102, 64 |
| Conread position: | 76-349 |
| Cow position: | chr28:31842163-31841893 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 49, 44 |
| Conread position: | 76-359 |
| Cow position: | chr28:8972494-8972775 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 149, 59 |
| Conread position: | 76-459 |
| Cow position: | chr28:22500959-22500590 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 57 |
| Conread position: | 76-460 |
| Cow position: | chr28:30077397-30077784 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 258 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 87, 55 |
| Conread position: | 76-485 |
| Cow position: | chr28:10674222-10674620 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 292 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 91, 59 |
| Conread position: | 76-488 |
| Cow position: | chr28:3001091-3000666 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 290 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 148, 61 |
| Conread position: | 76-488 |
| Cow position: | chr28:10534414-10534002 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 285 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 146, 57 |
| Conread position: | 76-488 |
| Cow position: | chr28:18590783-18591205 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 281 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 69, 59 |
| Conread position: | 76-488 |
| Cow position: | chr28:34560881-34561277 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 152, 59 |
| Conread position: | 77-304 |
| Cow position: | chr28:34199930-34199702 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 90, 60 |
| Conread position: | 77-398 |
| Cow position: | chr28:10762206-10762515 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 122, 66 |
| Conread position: | 77-488 |
| Cow position: | chr28:9285843-9285442 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 59 |
| Conread position: | 78-303 |
| Cow position: | chr28:27660226-27659998 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 85, 59 |
| Conread position: | 78-468 |
| Cow position: | chr28:7372729-7372343 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 59 |
| Conread position: | 78-470 |
| Cow position: | chr28:18096499-18096890 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 78-470 |
| Cow position: | chr28:30532220-30531828 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 18 |
| Conread position: | 80-454 |
| Cow position: | chr28:16346991-16346633 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 259 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 140, 57 |
| Conread position: | 87-450 |
| Cow position: | chr28:22488462-22488819 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 244 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 74, 47 |
| Conread position: | 179-290 |
| Cow position: | chr28:24997015-24996900 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 80 |
| Conread position: | 222-488 |
| Cow position: | chr28:16686700-16686959 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 9 |
Show alignments to all cow chromosomes.