Cow genome map
| Conread name: | rsin05_g3.y1 |
| Conread position: | 1-450 |
| Cow position: | chr29:32290040-32290485 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 44 |
| Conread position: | 1-451 |
| Cow position: | chr29:18025840-18026294 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 323 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 31, 150 |
| Conread position: | 1-470 |
| Cow position: | chr29:45208151-45208632 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 118 |
| Conread position: | 1-486 |
| Cow position: | chr29:21535272-21534753 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 136 |
| Conread position: | 1-488 |
| Cow position: | chr29:1613154-1612650 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 150 |
| Conread position: | 1-488 |
| Cow position: | chr29:13553560-13554060 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 151 |
| Conread position: | 2-488 |
| Cow position: | chr29:32644331-32644849 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 152 |
| Conread position: | 37-304 |
| Cow position: | chr29:18012071-18012339 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 33, 102 |
| Conread position: | 60-418 |
| Cow position: | chr29:15576561-15576203 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 246 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 50, 42 |
| Conread position: | 60-476 |
| Cow position: | chr29:29065923-29066335 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 76 |
| Conread position: | 60-486 |
| Cow position: | chr29:1934060-1933631 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 8 |
| Conread position: | 61-315 |
| Cow position: | chr29:24730777-24730534 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 159, 5 |
| Conread position: | 61-416 |
| Cow position: | chr29:6150570-6150221 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 77 |
| Conread position: | 64-466 |
| Cow position: | chr29:19761774-19762175 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 39 |
| Conread position: | 64-470 |
| Cow position: | chr29:40338039-40337624 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 40 |
| Conread position: | 67-486 |
| Cow position: | chr29:32963040-32963479 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 70 |
| Conread position: | 69-295 |
| Cow position: | chr29:4001923-4002149 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 8, 33 |
| Conread position: | 69-404 |
| Cow position: | chr29:22935792-22936120 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-417 |
| Cow position: | chr29:28100093-28100434 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 26, 69 |
| Conread position: | 69-451 |
| Cow position: | chr29:3584619-3584237 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 65 |
| Conread position: | 69-451 |
| Cow position: | chr29:19428172-19428542 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 8, 73 |
| Conread position: | 69-458 |
| Cow position: | chr29:42204992-42205402 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 293 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 69-466 |
| Cow position: | chr29:11696039-11696429 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 8, 39 |
| Conread position: | 69-467 |
| Cow position: | chr29:26263359-26263748 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-485 |
| Cow position: | chr29:10154288-10153872 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 281 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 8, 99 |
| Conread position: | 69-488 |
| Cow position: | chr29:961431-961849 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 8, 30 |
| Conread position: | 69-488 |
| Cow position: | chr29:34746149-34745736 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-488 |
| Cow position: | chr29:36586082-36586503 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 289 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 8, 33 |
| Conread position: | 70-301 |
| Cow position: | chr29:8136747-8136509 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 7, 67 |
| Conread position: | 70-302 |
| Cow position: | chr29:38933124-38932887 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 31 |
| Conread position: | 70-404 |
| Cow position: | chr29:24669447-24669788 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 7, 68 |
| Conread position: | 70-466 |
| Cow position: | chr29:4875399-4874994 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 68 |
| Conread position: | 70-488 |
| Cow position: | chr29:10225525-10225116 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 300 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 7, 33 |
| Conread position: | 73-416 |
| Cow position: | chr29:4084578-4084917 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 90, 8 |
| Conread position: | 75-292 |
| Cow position: | chr29:23154737-23154950 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 34, 26 |
| Conread position: | 75-367 |
| Cow position: | chr29:5187271-5186983 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 145, 46 |
| Conread position: | 76-294 |
| Cow position: | chr29:17153994-17154215 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 91, 61 |
| Conread position: | 76-304 |
| Cow position: | chr29:20539234-20539000 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 34, 26 |
| Conread position: | 76-306 |
| Cow position: | chr29:18364895-18364667 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 143, 61 |
| Conread position: | 76-329 |
| Cow position: | chr29:41113335-41113078 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 68 |
| Conread position: | 76-351 |
| Cow position: | chr29:43009599-43009322 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 92, 81 |
| Conread position: | 76-465 |
| Cow position: | chr29:6775472-6775092 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 148, 61 |
| Conread position: | 76-486 |
| Cow position: | chr29:37451824-37452223 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 91, 59 |
| Conread position: | 76-488 |
| Cow position: | chr29:18072441-18072860 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 63 |
| Conread position: | 77-411 |
| Cow position: | chr29:39332068-39331733 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 246 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 89, 58 |
| Conread position: | 78-317 |
| Cow position: | chr29:34774348-34774110 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 121, 59 |
| Conread position: | 78-451 |
| Cow position: | chr29:19792751-19792392 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 121, 59 |
| Conread position: | 78-485 |
| Cow position: | chr29:18085090-18085512 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 290 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 141, 59 |
| Conread position: | 78-486 |
| Cow position: | chr29:35434385-35434794 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 78-488 |
| Cow position: | chr29:45006101-45005700 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 79-397 |
| Cow position: | chr29:7397690-7397364 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 54 |
| Conread position: | 79-458 |
| Cow position: | chr29:34535715-34535330 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 41, 59 |
| Conread position: | 79-488 |
| Cow position: | chr29:649779-650204 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 55 |
| Conread position: | 80-458 |
| Cow position: | chr29:8512734-8513104 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 83, 55 |
| Conread position: | 83-451 |
| Cow position: | chr29:4537580-4537955 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 87-282 |
| Cow position: | chr29:6648790-6648984 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 100, 50 |
| Conread position: | 88-466 |
| Cow position: | chr29:36216646-36217016 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 47 |
| Conread position: | 103-293 |
| Cow position: | chr29:43517184-43516995 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 6, 35 |
| Conread position: | 140-312 |
| Cow position: | chr29:23112933-23113108 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 192-487 |
| Cow position: | chr29:34610087-34609795 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 222 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 16, 9 |
| Conread position: | 219-487 |
| Cow position: | chr29:19508602-19508876 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 75, 32 |
Show alignments to all cow chromosomes.