Cow genome map

Conread name: rsin05_g3.y1

Conread position: 1-306
Cow position: chr4:36755130-36755459 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 233
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 19, 153

Conread position: 1-363
Cow position: chr4:27186159-27185780 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 255
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 33, 52

Conread position: 1-383
Cow position: chr4:54110981-54111365 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 270
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 37, 114

Conread position: 1-426
Cow position: chr4:44450168-44449730 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 115

Conread position: 1-454
Cow position: chr4:24002553-24002087 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 152

Conread position: 1-466
Cow position: chr4:38309725-38309241 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 204

Conread position: 1-470
Cow position: chr4:40576497-40576022 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 342
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 31, 153

Conread position: 1-488
Cow position: chr4:2609652-2610150 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 121

Conread position: 1-488
Cow position: chr4:13143108-13142627 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 333
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 31, 151

Conread position: 1-488
Cow position: chr4:38181105-38181598 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 20

Conread position: 2-293
Cow position: chr4:11390170-11389856 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 217
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 30, 152

Conread position: 2-306
Cow position: chr4:24414659-24414991 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 246
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 30, 156

Conread position: 5-378
Cow position: chr4:9649442-9649837 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 279
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 27, 146

Conread position: 5-477
Cow position: chr4:47774216-47773736 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 148

Conread position: 8-488
Cow position: chr4:16340167-16339680 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 28

Conread position: 45-372
Cow position: chr4:31698020-31697675 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 233
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 32, 99

Conread position: 57-289
Cow position: chr4:49740966-49741200 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 172
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 20, 45

Conread position: 59-316
Cow position: chr4:22861434-22861174 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 185
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 11, 42

Conread position: 61-451
Cow position: chr4:56177301-56177699 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 75

Conread position: 61-488
Cow position: chr4:12560512-12560949 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 306
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 16, 77

Conread position: 64-454
Cow position: chr4:37703759-37704147 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 75

Conread position: 65-293
Cow position: chr4:33030006-33030230 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 171
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 12, 73

Conread position: 66-296
Cow position: chr4:20298729-20298961 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 166
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 11, 37

Conread position: 66-359
Cow position: chr4:1356012-1355725 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 201
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 154, 71

Conread position: 66-488
Cow position: chr4:5610573-5610152 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 72

Conread position: 67-434
Cow position: chr4:993582-993223 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 246
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 172, 76

Conread position: 68-442
Cow position: chr4:59118658-59118273 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 34

Conread position: 68-466
Cow position: chr4:37553545-37553146 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 69

Conread position: 68-488
Cow position: chr4:10992709-10992279 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 34

Conread position: 69-286
Cow position: chr4:60030241-60030463 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 162
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 8, 69

Conread position: 69-291
Cow position: chr4:46549587-46549810 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 8, 75

Conread position: 69-293
Cow position: chr4:65464595-65464378 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 157
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 8, 53

Conread position: 69-302
Cow position: chr4:488994-488756 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 171
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 10, 34

Conread position: 69-306
Cow position: chr4:9482750-9482514 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 179
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 8, 34

Conread position: 69-306
Cow position: chr4:15462808-15462571 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 164
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 8, 69

Conread position: 69-417
Cow position: chr4:1436217-1435867 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 243
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 8, 35

Conread position: 69-447
Cow position: chr4:46709028-46708654 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 67

Conread position: 69-451
Cow position: chr4:14813024-14812652 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 271
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 8, 33

Conread position: 69-451
Cow position: chr4:18602758-18602377 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 69

Conread position: 69-451
Cow position: chr4:21589107-21588723 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 271
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 8, 86

Conread position: 69-451
Cow position: chr4:53055570-53055196 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 268
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 8, 72

Conread position: 69-469
Cow position: chr4:51783674-51784074 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 278
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 8, 53

Conread position: 69-470
Cow position: chr4:58834906-58834505 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 288
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 8, 34

Conread position: 69-476
Cow position: chr4:5777545-5777134 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 71

Conread position: 69-485
Cow position: chr4:4319642-4319233 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 288
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 8, 69

Conread position: 69-488
Cow position: chr4:11872414-11871989 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 65

Conread position: 69-488
Cow position: chr4:23655494-23655916 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 64

Conread position: 69-488
Cow position: chr4:23853698-23854109 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 67

Conread position: 69-488
Cow position: chr4:34172070-34171652 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 65

Conread position: 70-417
Cow position: chr4:36815582-36815936 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 239
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 71, 98

Conread position: 70-470
Cow position: chr4:61898033-61897639 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 72

Conread position: 70-471
Cow position: chr4:26008946-26009347 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 72

Conread position: 70-475
Cow position: chr4:8120664-8120257 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 267
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 95, 63

Conread position: 76-304
Cow position: chr4:23508787-23509014 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 166
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 39, 26

Conread position: 76-306
Cow position: chr4:46370452-46370222 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 164
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 146, 59

Conread position: 76-315
Cow position: chr4:61625124-61624879 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 181
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 91, 61

Conread position: 76-400
Cow position: chr4:19502290-19501969 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 235
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 129, 45

Conread position: 76-400
Cow position: chr4:33149350-33149669 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 227
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 33, 25

Conread position: 76-450
Cow position: chr4:13877700-13878068 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 270
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 34, 25

Conread position: 76-482
Cow position: chr4:52017339-52016953 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 283
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 151, 59

Conread position: 76-486
Cow position: chr4:31136261-31136664 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 58

Conread position: 76-486
Cow position: chr4:56233199-56233604 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 61

Conread position: 76-486
Cow position: chr4:66918400-66918825 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 59

Conread position: 76-488
Cow position: chr4:12464355-12464761 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 61

Conread position: 76-488
Cow position: chr4:28378145-28377742 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 52

Conread position: 76-488
Cow position: chr4:49794189-49794591 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 289
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 123, 91

Conread position: 77-376
Cow position: chr4:10837854-10837548 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 213
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 33, 25

Conread position: 77-450
Cow position: chr4:19420844-19421210 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 263
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 33, 25

Conread position: 77-470
Cow position: chr4:33097448-33097079 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 271
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 43, 62

Conread position: 78-322
Cow position: chr4:8890415-8890172 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 173
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 34, 24

Conread position: 78-364
Cow position: chr4:8413600-8413315 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 59

Conread position: 78-434
Cow position: chr4:47047250-47047609 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 57

Conread position: 78-438
Cow position: chr4:43808087-43807726 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 236
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 91, 59

Conread position: 78-450
Cow position: chr4:48152861-48152487 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 57

Conread position: 78-451
Cow position: chr4:533755-534122 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 259
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 28, 23

Conread position: 78-451
Cow position: chr4:1404549-1404923 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 249
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 34, 24

Conread position: 78-451
Cow position: chr4:6034581-6034209 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 24

Conread position: 78-451
Cow position: chr4:12657771-12658134 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 246
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 28, 24

Conread position: 78-451
Cow position: chr4:44777724-44777351 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 23

Conread position: 78-461
Cow position: chr4:51850709-51851086 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 12

Conread position: 78-470
Cow position: chr4:6653256-6653626 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 254
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 59, 0

Conread position: 78-488
Cow position: chr4:27540130-27540534 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 62

Conread position: 78-488
Cow position: chr4:30573965-30574370 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 59

Conread position: 79-306
Cow position: chr4:36578084-36577858 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 158
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 140, 42

Conread position: 79-314
Cow position: chr4:40410843-40410611 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 168
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 141, 58

Conread position: 79-485
Cow position: chr4:61272125-61271719 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 56

Conread position: 80-458
Cow position: chr4:5575628-5576014 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 113

Conread position: 81-398
Cow position: chr4:24087191-24087511 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 224
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 28, 21

Conread position: 81-487
Cow position: chr4:20328201-20327793 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 56

Conread position: 85-488
Cow position: chr4:22115109-22115527 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 41

Conread position: 89-420
Cow position: chr4:3893247-3893574 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 228
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 60, 77

Conread position: 133-470
Cow position: chr4:25197937-25197597 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 43

Conread position: 170-343
Cow position: chr4:45073904-45073740 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 50, 115

Conread position: 208-344
Cow position: chr4:6304866-6305002 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 297-488
Cow position: chr4:58948189-58947991 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 150
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 27, 71

Show alignments to all cow chromosomes.