Cow genome map

Conread name: rsin05_g3.y1

Conread position: 1-286
Cow position: chr6:1468325-1468029 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 214
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 31, 44

Conread position: 1-287
Cow position: chr6:828223-827917 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 218
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 31, 151

Conread position: 1-290
Cow position: chr6:15783379-15783067 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 218
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 31, 113

Conread position: 1-295
Cow position: chr6:12406836-12407134 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 210
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 30, 143

Conread position: 1-316
Cow position: chr6:35416372-35416023 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 245
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 31, 0

Conread position: 1-398
Cow position: chr6:32427733-32428121 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 278
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 76, 23

Conread position: 1-401
Cow position: chr6:28503797-28504238 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 312
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 31, 155

Conread position: 1-477
Cow position: chr6:12387865-12387369 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 153

Conread position: 1-488
Cow position: chr6:52557013-52556509 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 152

Conread position: 1-488
Cow position: chr6:60931443-60930932 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 154

Conread position: 2-458
Cow position: chr6:7253958-7253490 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 37

Conread position: 6-458
Cow position: chr6:36918700-36918243 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 24

Conread position: 10-294
Cow position: chr6:17326808-17326509 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 213
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 10, 139

Conread position: 57-488
Cow position: chr6:32211092-32210662 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 47

Conread position: 60-488
Cow position: chr6:12550805-12551234 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 73

Conread position: 61-470
Cow position: chr6:47339825-47339409 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 296
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 16, 74

Conread position: 63-451
Cow position: chr6:4156006-4155611 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 272
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 7, 74

Conread position: 64-314
Cow position: chr6:40157846-40157592 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 175
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 6, 131

Conread position: 64-367
Cow position: chr6:58370107-58370422 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 224
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 7, 73

Conread position: 64-487
Cow position: chr6:2607154-2607580 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 75

Conread position: 65-451
Cow position: chr6:65261167-65260781 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 262
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 102, 78

Conread position: 66-304
Cow position: chr6:44375432-44375675 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 170
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 11, 41

Conread position: 66-476
Cow position: chr6:65711369-65711780 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 69

Conread position: 66-488
Cow position: chr6:28811457-28811029 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 62

Conread position: 67-301
Cow position: chr6:16132701-16132935 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 166
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 100, 73

Conread position: 67-476
Cow position: chr6:64426733-64427146 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 285
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 103, 128

Conread position: 68-482
Cow position: chr6:1914175-1914573 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 70

Conread position: 68-488
Cow position: chr6:58073583-58074014 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 69

Conread position: 69-294
Cow position: chr6:59620186-59620412 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 168
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 8, 34

Conread position: 69-304
Cow position: chr6:29084704-29084462 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 8, 69

Conread position: 69-304
Cow position: chr6:42726973-42726734 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 172
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 8, 69

Conread position: 69-316
Cow position: chr6:21396522-21396279 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 175
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 8, 69

Conread position: 69-321
Cow position: chr6:68048797-68049046 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 183
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 8, 33

Conread position: 69-323
Cow position: chr6:42131281-42131016 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 197
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 8, 34

Conread position: 69-328
Cow position: chr6:10706363-10706102 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 197
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 9, 33

Conread position: 69-451
Cow position: chr6:52627156-52627534 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 270
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 8, 67

Conread position: 69-459
Cow position: chr6:54357835-54357441 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 38

Conread position: 69-470
Cow position: chr6:35873039-35872640 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 268
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 8, 69

Conread position: 69-475
Cow position: chr6:25358623-25359027 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 65

Conread position: 69-479
Cow position: chr6:50800871-50800459 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 69

Conread position: 69-488
Cow position: chr6:18961974-18961550 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 69

Conread position: 69-488
Cow position: chr6:28476713-28477144 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 129

Conread position: 69-488
Cow position: chr6:36651970-36652385 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 65

Conread position: 70-303
Cow position: chr6:7104539-7104307 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 160
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 7, 68

Conread position: 70-438
Cow position: chr6:37735326-37735700 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 242
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 42, 67

Conread position: 70-439
Cow position: chr6:16257421-16257780 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 234
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 143, 67

Conread position: 70-450
Cow position: chr6:1733969-1733588 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 260
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 97, 65

Conread position: 70-451
Cow position: chr6:38454921-38454533 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 266
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 97, 67

Conread position: 70-451
Cow position: chr6:40238534-40238139 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 259
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 50, 65

Conread position: 70-460
Cow position: chr6:38797840-38798236 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 263
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 117, 63

Conread position: 70-470
Cow position: chr6:59507889-59508303 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 65

Conread position: 70-482
Cow position: chr6:10612405-10612817 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 296
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 96, 67

Conread position: 70-488
Cow position: chr6:3979114-3978696 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 286
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 7, 68

Conread position: 70-488
Cow position: chr6:16625488-16625907 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 71

Conread position: 70-488
Cow position: chr6:16675364-16675768 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 290
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 6, 66

Conread position: 70-488
Cow position: chr6:67950478-67950918 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 296
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 6, 32

Conread position: 71-400
Cow position: chr6:9733283-9732956 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 229
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 6, 67

Conread position: 76-301
Cow position: chr6:22017476-22017250 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 164
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 34, 26

Conread position: 76-337
Cow position: chr6:18955479-18955218 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 195
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 106, 61

Conread position: 76-449
Cow position: chr6:39358777-39358420 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 27

Conread position: 76-482
Cow position: chr6:65871467-65871856 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 26

Conread position: 76-484
Cow position: chr6:12623025-12623432 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 59

Conread position: 76-486
Cow position: chr6:24030929-24031339 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 59

Conread position: 76-488
Cow position: chr6:2012577-2012985 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 61

Conread position: 76-488
Cow position: chr6:46570680-46571083 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 58

Conread position: 76-488
Cow position: chr6:52478889-52478448 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 62

Conread position: 77-309
Cow position: chr6:7824168-7824398 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 166
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 86, 60

Conread position: 77-477
Cow position: chr6:17414898-17414497 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 25

Conread position: 78-316
Cow position: chr6:6459815-6460052 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 168
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 28, 23

Conread position: 78-342
Cow position: chr6:19707135-19707398 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 194
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 32, 24

Conread position: 78-396
Cow position: chr6:32287176-32287490 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 228
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 88, 57

Conread position: 78-426
Cow position: chr6:65016333-65015986 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 237
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 129, 59

Conread position: 78-432
Cow position: chr6:60673106-60673455 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 245
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 121, 45

Conread position: 78-451
Cow position: chr6:7137636-7137264 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 24

Conread position: 78-451
Cow position: chr6:10266429-10266057 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 252
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 109, 59

Conread position: 78-451
Cow position: chr6:16645577-16645950 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 57

Conread position: 78-451
Cow position: chr6:38988119-38987750 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 102

Conread position: 78-458
Cow position: chr6:13741254-13741627 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 24

Conread position: 78-488
Cow position: chr6:58075778-58076196 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 287
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 71, 101

Conread position: 79-428
Cow position: chr6:8599345-8599691 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 246
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 108, 58

Conread position: 79-449
Cow position: chr6:37761946-37762317 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 261
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 77, 53

Conread position: 79-451
Cow position: chr6:9737557-9737191 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 58

Conread position: 79-451
Cow position: chr6:29284246-29284620 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 258
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 81, 76

Conread position: 79-488
Cow position: chr6:10332551-10332124 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 58

Conread position: 81-464
Cow position: chr6:33921694-33921315 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 250
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 135, 56

Conread position: 82-426
Cow position: chr6:61443550-61443199 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 53

Show alignments to all cow chromosomes.