Cow genome map

Conread name: rsin05_g3.y1

Conread position: 1-276
Cow position: chr9:5030393-5030100 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 205
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 30, 152

Conread position: 1-282
Cow position: chr9:41958260-41957976 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 207
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 31, 72

Conread position: 1-284
Cow position: chr9:50293919-50294219 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 212
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 31, 59

Conread position: 1-290
Cow position: chr9:3075675-3075988 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 222
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 32, 155

Conread position: 1-302
Cow position: chr9:29825915-29825601 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 215
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 30, 152

Conread position: 1-304
Cow position: chr9:42172255-42172573 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 232
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 18, 124

Conread position: 1-307
Cow position: chr9:34945485-34945158 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 234
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 31, 17

Conread position: 1-470
Cow position: chr9:22656337-22656826 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 120

Conread position: 1-484
Cow position: chr9:8612911-8612394 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 151

Conread position: 1-488
Cow position: chr9:52632906-52633393 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 155

Conread position: 3-487
Cow position: chr9:38547011-38546518 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 354
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 30, 152

Conread position: 4-488
Cow position: chr9:48773936-48773445 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 152

Conread position: 5-289
Cow position: chr9:9957649-9957345 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 222
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 26, 151

Conread position: 31-477
Cow position: chr9:38032560-38033029 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 24

Conread position: 60-397
Cow position: chr9:9558511-9558162 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 238
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 17, 75

Conread position: 60-470
Cow position: chr9:35203433-35203004 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 286
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 17, 76

Conread position: 61-488
Cow position: chr9:38183947-38184382 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 77

Conread position: 62-451
Cow position: chr9:2548079-2547690 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 263
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 9, 42

Conread position: 64-465
Cow position: chr9:53110048-53109661 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 277
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 17, 74

Conread position: 66-476
Cow position: chr9:11286279-11285870 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 283
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 11, 73

Conread position: 67-292
Cow position: chr9:9402642-9402861 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 155
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 106, 74

Conread position: 67-439
Cow position: chr9:47390821-47390438 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 257
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 100, 68

Conread position: 67-470
Cow position: chr9:4859074-4858666 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 294
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 100, 70

Conread position: 67-478
Cow position: chr9:35023484-35023895 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 272
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 111, 70

Conread position: 69-277
Cow position: chr9:33067740-33067532 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 146
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 8, 69

Conread position: 69-284
Cow position: chr9:2910617-2910398 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 170
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 8, 53

Conread position: 69-284
Cow position: chr9:5518087-5518307 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 162
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 8, 67

Conread position: 69-291
Cow position: chr9:23540921-23541143 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 163
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 8, 67

Conread position: 69-294
Cow position: chr9:58615069-58614845 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 165
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 111, 68

Conread position: 69-304
Cow position: chr9:47263658-47263899 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 171
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 65

Conread position: 69-322
Cow position: chr9:15006254-15006514 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 189
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 8, 69

Conread position: 69-337
Cow position: chr9:30162719-30162451 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 205
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 8, 34

Conread position: 69-400
Cow position: chr9:41932597-41932263 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 244
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 8, 67

Conread position: 69-448
Cow position: chr9:42628155-42628528 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 264
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 8, 69

Conread position: 69-451
Cow position: chr9:13181534-13181913 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 264
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 8, 67

Conread position: 69-451
Cow position: chr9:22803037-22802660 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 261
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 8, 34

Conread position: 69-451
Cow position: chr9:37510535-37510160 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 67

Conread position: 69-451
Cow position: chr9:48017301-48017679 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 69

Conread position: 69-453
Cow position: chr9:27892104-27892493 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 265
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 8, 341

Conread position: 69-454
Cow position: chr9:62668927-62668539 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 261
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 8, 31

Conread position: 69-457
Cow position: chr9:10676005-10676393 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 247
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 8, 65

Conread position: 69-462
Cow position: chr9:49292567-49292969 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 277
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 9, 64

Conread position: 69-464
Cow position: chr9:29338513-29338907 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 69

Conread position: 69-465
Cow position: chr9:26978485-26978876 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 267
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 8, 34

Conread position: 69-475
Cow position: chr9:34092883-34093314 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 65

Conread position: 69-485
Cow position: chr9:47926432-47926018 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 53

Conread position: 69-486
Cow position: chr9:24996976-24997415 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 69

Conread position: 69-486
Cow position: chr9:53607871-53608286 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 33

Conread position: 69-487
Cow position: chr9:37017407-37016993 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 69

Conread position: 69-488
Cow position: chr9:5501362-5500960 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 291
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 8, 69

Conread position: 69-488
Cow position: chr9:34310565-34310129 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 69

Conread position: 70-336
Cow position: chr9:8720280-8720014 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 190
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 7, 57

Conread position: 70-442
Cow position: chr9:55299006-55298639 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 239
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 71, 95

Conread position: 70-448
Cow position: chr9:23428707-23429089 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 247
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 71, 129

Conread position: 70-458
Cow position: chr9:14343449-14343051 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 265
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 40, 31

Conread position: 70-470
Cow position: chr9:44914592-44914964 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 276
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 7, 64

Conread position: 70-487
Cow position: chr9:52407684-52407270 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 66

Conread position: 75-314
Cow position: chr9:4630987-4630764 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 165
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 123, 60

Conread position: 75-454
Cow position: chr9:21963093-21963472 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 60

Conread position: 75-488
Cow position: chr9:5246362-5245964 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 59

Conread position: 75-488
Cow position: chr9:20988926-20989355 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 295
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 44, 27

Conread position: 76-304
Cow position: chr9:12184337-12184102 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 168
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 87, 59

Conread position: 76-342
Cow position: chr9:20816356-20816090 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 193
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 111, 61

Conread position: 76-466
Cow position: chr9:17740433-17740819 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 61

Conread position: 76-488
Cow position: chr9:19382851-19382427 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 124

Conread position: 76-488
Cow position: chr9:21459647-21460050 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 61

Conread position: 76-488
Cow position: chr9:46316274-46316681 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 45

Conread position: 77-305
Cow position: chr9:24398621-24398850 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 167
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 90, 60

Conread position: 78-304
Cow position: chr9:34467159-34467373 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 159
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 146, 59

Conread position: 78-394
Cow position: chr9:13186214-13186529 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 220
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 94, 43

Conread position: 78-438
Cow position: chr9:217472-217115 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 241
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 149, 59

Conread position: 78-451
Cow position: chr9:18478261-18477888 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 23

Conread position: 78-451
Cow position: chr9:29516253-29515880 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 24

Conread position: 78-451
Cow position: chr9:37108741-37109114 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 23

Conread position: 79-292
Cow position: chr9:50668336-50668119 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 154
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 70, 56

Conread position: 79-303
Cow position: chr9:23043469-23043233 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 171
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 88, 55

Conread position: 81-472
Cow position: chr9:19266641-19267045 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 286
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 87, 56

Conread position: 82-372
Cow position: chr9:35357420-35357699 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 210
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 19, 24

Conread position: 82-449
Cow position: chr9:7410288-7409928 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 59

Conread position: 87-456
Cow position: chr9:31077174-31077539 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 50

Conread position: 88-459
Cow position: chr9:36601913-36602284 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 253
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 101, 47

Conread position: 89-475
Cow position: chr9:2597177-2597560 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 265
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 78, 46

Conread position: 140-451
Cow position: chr9:22625964-22626279 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 222
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 47, 36

Conread position: 148-488
Cow position: chr9:44108386-44108727 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 145
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 186, 228

Conread position: 303-487
Cow position: chr9:11201868-11201696 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 147
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 30, 51

Conread position: 310-487
Cow position: chr9:58853798-58853619 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 140
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 25, 89

Conread position: 327-488
Cow position: chr9:20839878-20839718 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 132
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 130, 75

Conread position: 369-487
Cow position: chr9:11364115-11363998 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 14, 23

Show alignments to all cow chromosomes.