Cow genome map
| Conread name: | rsin12_e19.y1 |
| Conread position: | 295-560 |
| Cow position: | chr1:40512410-40512685 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 305-560 |
| Cow position: | chr1:88269595-88269850 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 25, 84 |
| Conread position: | 314-558 |
| Cow position: | chr1:17941177-17941425 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 314-559 |
| Cow position: | chr1:18012897-18013141 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 314-560 |
| Cow position: | chr1:67327661-67327904 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 87, 40 |
| Conread position: | 315-550 |
| Cow position: | chr1:25179421-25179662 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 315-556 |
| Cow position: | chr1:52358668-52358913 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 315-557 |
| Cow position: | chr1:18027152-18027406 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 315-558 |
| Cow position: | chr1:31365483-31365726 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 315-558 |
| Cow position: | chr1:85882602-85882361 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 183 |
| Conread position: | 315-559 |
| Cow position: | chr1:102434429-102434677 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 315-560 |
| Cow position: | chr1:3385412-3385660 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 144 |
| Conread position: | 315-560 |
| Cow position: | chr1:8825659-8825411 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 190 |
| Conread position: | 315-560 |
| Cow position: | chr1:21999347-21999596 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 315-560 |
| Cow position: | chr1:28873684-28873435 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 315-560 |
| Cow position: | chr1:30534414-30534663 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 315-560 |
| Cow position: | chr1:42737062-42736812 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 315-560 |
| Cow position: | chr1:49973581-49973830 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 315-560 |
| Cow position: | chr1:55321537-55321780 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 139 |
| Conread position: | 315-560 |
| Cow position: | chr1:56143728-56143976 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 162 |
| Conread position: | 315-560 |
| Cow position: | chr1:58336445-58336196 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 315-560 |
| Cow position: | chr1:72186275-72186519 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 27 |
| Conread position: | 315-560 |
| Cow position: | chr1:73070445-73070695 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 315-560 |
| Cow position: | chr1:76544932-76545180 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 111 |
| Conread position: | 315-560 |
| Cow position: | chr1:79636347-79636576 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 5, 103 |
| Conread position: | 315-560 |
| Cow position: | chr1:86698608-86698857 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 315-560 |
| Cow position: | chr1:91892512-91892762 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 315-560 |
| Cow position: | chr1:94660282-94660043 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 89, 174 |
| Conread position: | 315-560 |
| Cow position: | chr1:99914027-99913777 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 322-559 |
| Cow position: | chr1:30519288-30519052 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 71, 90 |
| Conread position: | 322-560 |
| Cow position: | chr1:57366525-57366771 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 349-560 |
| Cow position: | chr1:85780204-85780419 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 372-558 |
| Cow position: | chr1:63502406-63502214 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 403-560 |
| Cow position: | chr1:33712583-33712427 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 427-560 |
| Cow position: | chr1:21720702-21720572 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 9, 0 |
Show alignments to all cow chromosomes.