Cow genome map

Conread name: rsin14_g1.y1

Conread position: 1-315
Cow position: chr1:44087673-44087368 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 213
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 14, 46

Conread position: 1-347
Cow position: chr1:40906684-40907030 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 231
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 14, 131

Conread position: 1-495
Cow position: chr1:53197824-53198322 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 313
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 19, 73

Conread position: 1-521
Cow position: chr1:18245320-18244798 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 64

Conread position: 1-521
Cow position: chr1:79637877-79637354 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 46

Conread position: 3-181
Cow position: chr1:67900920-67900740 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 12, 108

Conread position: 3-331
Cow position: chr1:89478106-89478436 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 230
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 17, 290

Conread position: 3-495
Cow position: chr1:52173444-52172941 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 44

Conread position: 3-505
Cow position: chr1:89771820-89771323 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 319
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 16, 49

Conread position: 3-521
Cow position: chr1:67285571-67286095 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 70

Conread position: 4-510
Cow position: chr1:77122488-77122004 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 130

Conread position: 12-303
Cow position: chr1:87460472-87460194 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 196
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 24, 134

Conread position: 17-127
Cow position: chr1:55324406-55324295 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 17-495
Cow position: chr1:102548263-102548728 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 320
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 11, 31

Conread position: 18-495
Cow position: chr1:17037492-17037021 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 310
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 10, 52

Conread position: 32-521
Cow position: chr1:40514384-40513910 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 110

Conread position: 35-300
Cow position: chr1:42057680-42057944 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 190
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 253, 0

Conread position: 41-495
Cow position: chr1:62924701-62925162 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 280
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 15, 233

Conread position: 57-315
Cow position: chr1:52322887-52323140 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 175
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 125, 49

Conread position: 62-494
Cow position: chr1:33894601-33895041 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 286
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 76, 34

Conread position: 62-495
Cow position: chr1:11293011-11292574 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 276
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 259, 201

Conread position: 62-495
Cow position: chr1:13449285-13449721 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 274
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 246, 201

Conread position: 62-495
Cow position: chr1:17013634-17013198 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 272
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 268, 199

Conread position: 62-495
Cow position: chr1:21086502-21086940 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 276
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 259, 200

Conread position: 62-495
Cow position: chr1:30284499-30284062 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 261
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 268, 201

Conread position: 62-495
Cow position: chr1:33850353-33850790 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 272
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 175, 171

Conread position: 62-495
Cow position: chr1:39542869-39543301 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 272
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 268, 201

Conread position: 62-495
Cow position: chr1:59211041-59210604 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 273
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 268, 201

Conread position: 62-495
Cow position: chr1:61308114-61308541 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 271
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 259, 139

Conread position: 62-495
Cow position: chr1:69764129-69764561 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 274
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 268, 107

Conread position: 62-495
Cow position: chr1:71563474-71563037 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 279
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 232, 130

Conread position: 62-495
Cow position: chr1:79921632-79921197 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 269
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 235, 200

Conread position: 62-495
Cow position: chr1:80360072-80359635 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 272
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 246, 201

Conread position: 62-495
Cow position: chr1:82651740-82652174 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 278
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 259, 200

Conread position: 62-495
Cow position: chr1:86549028-86548592 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 272
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 162, 151

Conread position: 63-495
Cow position: chr1:57655654-57656089 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 148

Conread position: 63-495
Cow position: chr1:91898106-91898539 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 268
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 267, 200

Conread position: 66-495
Cow position: chr1:67836026-67835594 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 278
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 267, 70

Conread position: 72-488
Cow position: chr1:31395534-31395954 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 258
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 258, 191

Conread position: 72-488
Cow position: chr1:40685585-40685162 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 268
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 107, 136

Conread position: 72-489
Cow position: chr1:20828020-20828435 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 253
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 258, 66

Conread position: 72-494
Cow position: chr1:55277364-55276950 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 261
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 191, 199

Conread position: 72-495
Cow position: chr1:18881281-18880854 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 263
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 169, 178

Conread position: 72-495
Cow position: chr1:30024088-30023660 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 254
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 236, 191

Conread position: 72-495
Cow position: chr1:43019231-43019662 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 267
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 171, 185

Conread position: 72-495
Cow position: chr1:58223415-58223831 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 268
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 242, 105

Conread position: 72-495
Cow position: chr1:68501125-68501554 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 258
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 185, 192

Conread position: 72-495
Cow position: chr1:87449056-87449483 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 256
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 236, 191

Conread position: 72-495
Cow position: chr1:89424695-89425121 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 259
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 250, 120

Conread position: 72-495
Cow position: chr1:91719535-91719108 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 269
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 225, 201

Conread position: 72-495
Cow position: chr1:97559820-97560249 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 265
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 9, 190

Conread position: 74-488
Cow position: chr1:82563621-82564038 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 254
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 219, 188

Conread position: 109-495
Cow position: chr1:88758705-88759096 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 238
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 199, 154

Conread position: 125-495
Cow position: chr1:56162491-56162861 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 237
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 24, 11

Conread position: 125-521
Cow position: chr1:89741046-89740640 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 276
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 198, 122

Conread position: 138-521
Cow position: chr1:53363905-53364285 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 161

Conread position: 147-521
Cow position: chr1:55324305-55323938 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 35

Conread position: 183-495
Cow position: chr1:40052573-40052889 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 203
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 23, 81

Conread position: 195-489
Cow position: chr1:89900414-89900123 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 204
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 15, 53

Conread position: 195-520
Cow position: chr1:101149121-101149441 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 231
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 13, 52

Conread position: 207-488
Cow position: chr1:13645022-13645299 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 193
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 5, 41

Conread position: 207-488
Cow position: chr1:69536217-69536493 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 189
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 158, 40

Conread position: 207-520
Cow position: chr1:45096880-45097193 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 221
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 167, 40

Conread position: 207-520
Cow position: chr1:87244084-87244396 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 208
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 162, 40

Conread position: 209-488
Cow position: chr1:28722102-28722378 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 192
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 160, 38

Conread position: 209-489
Cow position: chr1:28802127-28801845 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 190
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 160, 38

Conread position: 209-489
Cow position: chr1:42289707-42289986 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 186
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 160, 39

Conread position: 209-489
Cow position: chr1:59672369-59672647 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 186
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 101, 38

Conread position: 209-489
Cow position: chr1:88634676-88634956 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 188
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 160, 38

Conread position: 209-489
Cow position: chr1:101858682-101858402 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 188
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 160, 38

Conread position: 211-520
Cow position: chr1:33711347-33711658 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 214
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 97, 36

Conread position: 223-489
Cow position: chr1:3934854-3934587 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 186
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 85, 37

Conread position: 224-489
Cow position: chr1:63606495-63606226 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 185
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 65, 36

Conread position: 226-520
Cow position: chr1:82919346-82919052 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 197
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 104, 21

Conread position: 227-489
Cow position: chr1:22000657-22000395 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 184
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 91, 33

Conread position: 246-489
Cow position: chr1:38414152-38414397 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 169
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 90, 8

Conread position: 262-489
Cow position: chr1:18406843-18406612 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 160
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 48, 43

Conread position: 265-489
Cow position: chr1:57367813-57367575 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 167
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 22, 109

Conread position: 285-521
Cow position: chr1:11863930-11863688 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 164
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 312-511
Cow position: chr1:72134812-72135015 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 57, 0

Conread position: 322-512
Cow position: chr1:76703961-76703767 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 46, 0

Conread position: 326-520
Cow position: chr1:62854420-62854222 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 149
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 43, 0

Conread position: 329-489
Cow position: chr1:31344978-31344815 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 29

Conread position: 329-520
Cow position: chr1:52323294-52323488 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 76, 0

Conread position: 330-489
Cow position: chr1:52233682-52233519 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 337-511
Cow position: chr1:34688759-34688932 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 31, 66

Conread position: 368-521
Cow position: chr1:37420539-37420388 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 27, 141

Conread position: 381-521
Cow position: chr1:40907567-40907709 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 19, 51

Show alignments to all cow chromosomes.