Cow genome map
| Conread name: | rsin14_g1.y1 |
| Conread position: | 1-286 |
| Cow position: | chr11:7686036-7686319 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 188, 32 |
| Conread position: | 1-299 |
| Cow position: | chr11:7393491-7393788 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 30, 104 |
| Conread position: | 3-495 |
| Cow position: | chr11:40779915-40779422 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 54 |
| Conread position: | 4-521 |
| Cow position: | chr11:24676791-24677313 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 110 |
| Conread position: | 17-495 |
| Cow position: | chr11:7122594-7122112 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 297 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 17-497 |
| Cow position: | chr11:1497355-1496866 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 297 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 27-511 |
| Cow position: | chr11:76375717-76375225 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 20 |
| Conread position: | 32-495 |
| Cow position: | chr11:45109869-45110329 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 299 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 337, 13 |
| Conread position: | 62-489 |
| Cow position: | chr11:53288680-53288255 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 271 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 268, 159 |
| Conread position: | 62-494 |
| Cow position: | chr11:37478360-37477924 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 271, 201 |
| Conread position: | 62-495 |
| Cow position: | chr11:3491770-3492207 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 281 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 259, 200 |
| Conread position: | 62-495 |
| Cow position: | chr11:17108910-17108473 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 271 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 268, 201 |
| Conread position: | 62-495 |
| Cow position: | chr11:28230985-28230550 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 283 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 268, 76 |
| Conread position: | 62-495 |
| Cow position: | chr11:57629284-57628849 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 270 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 268, 201 |
| Conread position: | 62-496 |
| Cow position: | chr11:15982403-15982839 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 267 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 268, 28 |
| Conread position: | 62-496 |
| Cow position: | chr11:19065501-19065063 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 259, 338 |
| Conread position: | 62-496 |
| Cow position: | chr11:33196132-33195697 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 268, 201 |
| Conread position: | 62-516 |
| Cow position: | chr11:52418154-52418610 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 294 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 268, 28 |
| Conread position: | 62-516 |
| Cow position: | chr11:63661784-63661331 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 200 |
| Conread position: | 72-495 |
| Cow position: | chr11:20921981-20921554 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 260 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 221, 190 |
| Conread position: | 72-495 |
| Cow position: | chr11:32449636-32450061 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 258 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 258, 177 |
| Conread position: | 72-495 |
| Cow position: | chr11:36745413-36744985 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 221, 190 |
| Conread position: | 72-495 |
| Cow position: | chr11:39799509-39799081 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 262 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 171, 178 |
| Conread position: | 72-495 |
| Cow position: | chr11:67449261-67449687 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 277 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 259, 64 |
| Conread position: | 72-495 |
| Cow position: | chr11:67847800-67847373 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 261, 191 |
| Conread position: | 123-489 |
| Cow position: | chr11:54208469-54208836 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 18, 13 |
| Conread position: | 137-495 |
| Cow position: | chr11:4042232-4041867 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 241 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 186, 84 |
| Conread position: | 145-489 |
| Cow position: | chr11:8243574-8243923 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 37, 117 |
| Conread position: | 146-513 |
| Cow position: | chr11:10211088-10210716 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 104, 120 |
| Conread position: | 158-518 |
| Cow position: | chr11:7112335-7112695 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 8 |
| Conread position: | 160-510 |
| Cow position: | chr11:52461975-52462312 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 147, 87 |
| Conread position: | 195-495 |
| Cow position: | chr11:9737056-9736753 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 134, 7 |
| Conread position: | 207-520 |
| Cow position: | chr11:9660436-9660131 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 161, 40 |
| Conread position: | 207-520 |
| Cow position: | chr11:75132473-75132779 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 162, 40 |
| Conread position: | 207-521 |
| Cow position: | chr11:44496649-44496334 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 123, 81 |
| Conread position: | 207-521 |
| Cow position: | chr11:66725256-66725569 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 123, 41 |
| Conread position: | 209-489 |
| Cow position: | chr11:37492682-37492404 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 165, 38 |
| Conread position: | 209-520 |
| Cow position: | chr11:34019861-34020168 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 160, 38 |
| Conread position: | 210-520 |
| Cow position: | chr11:21466048-21466357 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 159, 37 |
| Conread position: | 213-521 |
| Cow position: | chr11:30126353-30126040 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 117, 140 |
| Conread position: | 226-490 |
| Cow position: | chr11:53432811-53432549 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 107, 34 |
| Conread position: | 250-520 |
| Cow position: | chr11:30304261-30304532 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 124, 55 |
| Conread position: | 258-520 |
| Cow position: | chr11:8888157-8887891 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 258-521 |
| Cow position: | chr11:9221029-9220770 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 78, 28 |
| Conread position: | 266-489 |
| Cow position: | chr11:37094071-37093843 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 23, 32 |
| Conread position: | 276-521 |
| Cow position: | chr11:8262698-8262453 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 54, 209 |
| Conread position: | 307-489 |
| Cow position: | chr11:12359389-12359200 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 307-489 |
| Cow position: | chr11:24392357-24392546 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 326-520 |
| Cow position: | chr11:12352234-12352036 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 337-521 |
| Cow position: | chr11:56178984-56179167 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 32, 66 |
| Conread position: | 340-520 |
| Cow position: | chr11:12092822-12093006 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 356-520 |
| Cow position: | chr11:75919637-75919807 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 365-521 |
| Cow position: | chr11:7394218-7394366 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
Show alignments to all cow chromosomes.