Cow genome map
| Conread name: | rsin14_g1.y1 |
| Conread position: | 1-489 |
| Cow position: | chr15:7932659-7933143 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 46 |
| Conread position: | 1-518 |
| Cow position: | chr15:53337754-53338243 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-521 |
| Cow position: | chr15:32680895-32680369 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 76 |
| Conread position: | 2-212 |
| Cow position: | chr15:36641367-36641578 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 13, 178 |
| Conread position: | 2-521 |
| Cow position: | chr15:35649524-35649014 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 102 |
| Conread position: | 3-494 |
| Cow position: | chr15:17291089-17291575 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 320 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 22, 36 |
| Conread position: | 3-495 |
| Cow position: | chr15:8673905-8673411 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 314 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 22, 46 |
| Conread position: | 3-521 |
| Cow position: | chr15:371003-370487 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 131 |
| Conread position: | 3-521 |
| Cow position: | chr15:32692215-32692734 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 33 |
| Conread position: | 4-286 |
| Cow position: | chr15:16591429-16591141 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 9, 81 |
| Conread position: | 12-484 |
| Cow position: | chr15:4807086-4807562 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 16, 34 |
| Conread position: | 17-484 |
| Cow position: | chr15:1771127-1771599 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 36 |
| Conread position: | 17-495 |
| Cow position: | chr15:13427702-13428184 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 297 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 11, 41 |
| Conread position: | 27-495 |
| Cow position: | chr15:7232607-7233075 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 24 |
| Conread position: | 32-521 |
| Cow position: | chr15:2923231-2923702 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 13 |
| Conread position: | 48-521 |
| Cow position: | chr15:24792782-24793246 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 267 |
| Conread position: | 62-495 |
| Cow position: | chr15:18269270-18268839 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 204, 222 |
| Conread position: | 62-495 |
| Cow position: | chr15:20748113-20748548 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 259 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 268, 105 |
| Conread position: | 62-495 |
| Cow position: | chr15:22919837-22920271 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 246, 76 |
| Conread position: | 62-495 |
| Cow position: | chr15:28491437-28490997 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 91, 74 |
| Conread position: | 63-489 |
| Cow position: | chr15:32709251-32709677 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 267, 36 |
| Conread position: | 63-495 |
| Cow position: | chr15:1780971-1781398 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 152, 158 |
| Conread position: | 72-495 |
| Cow position: | chr15:7187328-7186901 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 222, 191 |
| Conread position: | 72-495 |
| Cow position: | chr15:11599403-11598976 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 254 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 171, 178 |
| Conread position: | 72-495 |
| Cow position: | chr15:17081470-17081044 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 258, 184 |
| Conread position: | 72-495 |
| Cow position: | chr15:21878646-21878218 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 263 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 171, 178 |
| Conread position: | 72-495 |
| Cow position: | chr15:22205406-22204978 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 221, 190 |
| Conread position: | 72-495 |
| Cow position: | chr15:36969394-36969822 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 236, 191 |
| Conread position: | 86-495 |
| Cow position: | chr15:7543603-7544017 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 250, 178 |
| Conread position: | 103-521 |
| Cow position: | chr15:327183-327598 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 265 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 219, 53 |
| Conread position: | 106-495 |
| Cow position: | chr15:2594049-2593662 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 77, 61 |
| Conread position: | 121-494 |
| Cow position: | chr15:17345508-17345134 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 209, 123 |
| Conread position: | 122-488 |
| Cow position: | chr15:8098269-8098638 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 140 |
| Conread position: | 123-489 |
| Cow position: | chr15:4648637-4649010 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 53, 9 |
| Conread position: | 181-488 |
| Cow position: | chr15:8749080-8749393 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 106, 88 |
| Conread position: | 192-521 |
| Cow position: | chr15:6456153-6456473 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 195-520 |
| Cow position: | chr15:6371963-6371636 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 9, 53 |
| Conread position: | 207-486 |
| Cow position: | chr15:7895293-7895014 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 78, 40 |
| Conread position: | 207-514 |
| Cow position: | chr15:4794575-4794882 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 162, 40 |
| Conread position: | 207-520 |
| Cow position: | chr15:6278359-6278049 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 162, 40 |
| Conread position: | 208-520 |
| Cow position: | chr15:6184007-6184315 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 194, 39 |
| Conread position: | 209-489 |
| Cow position: | chr15:21960417-21960696 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 160, 38 |
| Conread position: | 209-489 |
| Cow position: | chr15:36647820-36648101 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 14, 39 |
| Conread position: | 210-481 |
| Cow position: | chr15:4677396-4677671 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 121, 262 |
| Conread position: | 210-489 |
| Cow position: | chr15:6077638-6077921 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 220-489 |
| Cow position: | chr15:38195000-38195269 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 149, 27 |
| Conread position: | 224-489 |
| Cow position: | chr15:12422272-12422001 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 65, 35 |
| Conread position: | 226-489 |
| Cow position: | chr15:18575619-18575886 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 63, 34 |
| Conread position: | 227-489 |
| Cow position: | chr15:12272890-12272625 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 62, 33 |
| Conread position: | 236-495 |
| Cow position: | chr15:7259501-7259763 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 94, 27 |
| Conread position: | 236-521 |
| Cow position: | chr15:6387398-6387107 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 25, 106 |
| Conread position: | 237-521 |
| Cow position: | chr15:4960580-4960865 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 149, 57 |
| Conread position: | 237-521 |
| Cow position: | chr15:35734369-35734655 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 29, 196 |
| Conread position: | 249-521 |
| Cow position: | chr15:36641549-36641822 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 77, 154 |
| Conread position: | 252-520 |
| Cow position: | chr15:10788159-10787887 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 78, 230 |
| Conread position: | 252-520 |
| Cow position: | chr15:25790545-25790272 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 74, 67 |
| Conread position: | 253-489 |
| Cow position: | chr15:6651098-6650859 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 57, 52 |
| Conread position: | 263-478 |
| Cow position: | chr15:13520633-13520848 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 67, 143 |
| Conread position: | 269-489 |
| Cow position: | chr15:2075593-2075822 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 30 |
| Conread position: | 317-511 |
| Cow position: | chr15:21816757-21816565 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 52, 21 |
| Conread position: | 329-489 |
| Cow position: | chr15:25135444-25135280 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 339-521 |
| Cow position: | chr15:1763089-1763276 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 343-492 |
| Cow position: | chr15:31357916-31358069 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 372-520 |
| Cow position: | chr15:21623179-21623329 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 32, 7 |
Show alignments to all cow chromosomes.