Cow genome map
| Conread name: | rsin14_g1.y1 |
| Conread position: | 1-213 |
| Cow position: | chr2:5486365-5486151 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 20, 173 |
| Conread position: | 1-243 |
| Cow position: | chr2:783322-783069 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 14, 231 |
| Conread position: | 1-286 |
| Cow position: | chr2:25243783-25244066 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 19, 68 |
| Conread position: | 1-300 |
| Cow position: | chr2:52629378-52629083 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 173 |
| Conread position: | 1-521 |
| Cow position: | chr2:7900609-7901138 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 222 |
| Conread position: | 1-521 |
| Cow position: | chr2:15579412-15578871 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 169 |
| Conread position: | 2-521 |
| Cow position: | chr2:44992711-44992208 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 46 |
| Conread position: | 13-495 |
| Cow position: | chr2:59415130-59414643 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 315 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 15, 33 |
| Conread position: | 17-495 |
| Cow position: | chr2:47039866-47039384 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 302 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 11, 27 |
| Conread position: | 34-495 |
| Cow position: | chr2:6877101-6877555 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 29 |
| Conread position: | 55-521 |
| Cow position: | chr2:44936471-44935998 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 150 |
| Conread position: | 62-487 |
| Cow position: | chr2:52615050-52615483 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 253, 201 |
| Conread position: | 62-495 |
| Cow position: | chr2:2379713-2380148 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 201, 70 |
| Conread position: | 62-495 |
| Cow position: | chr2:40963539-40963102 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 268, 201 |
| Conread position: | 62-495 |
| Cow position: | chr2:44089889-44090326 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 268, 201 |
| Conread position: | 62-495 |
| Cow position: | chr2:54736214-54736651 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 279 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 259, 207 |
| Conread position: | 62-495 |
| Cow position: | chr2:57333790-57334226 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 280 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 259, 201 |
| Conread position: | 62-495 |
| Cow position: | chr2:67422247-67421813 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 201 |
| Conread position: | 62-496 |
| Cow position: | chr2:2414207-2413769 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 268, 201 |
| Conread position: | 63-489 |
| Cow position: | chr2:2185639-2185208 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 251, 200 |
| Conread position: | 63-495 |
| Cow position: | chr2:25031876-25031443 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 272, 200 |
| Conread position: | 69-520 |
| Cow position: | chr2:14559789-14560245 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 0 |
| Conread position: | 72-495 |
| Cow position: | chr2:26865946-26865519 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 258, 191 |
| Conread position: | 72-495 |
| Cow position: | chr2:26920290-26920717 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 191, 216 |
| Conread position: | 72-495 |
| Cow position: | chr2:27816364-27816793 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 259 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 98, 192 |
| Conread position: | 72-495 |
| Cow position: | chr2:41655689-41656108 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 258, 158 |
| Conread position: | 72-495 |
| Cow position: | chr2:51991929-51991510 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 247, 57 |
| Conread position: | 74-495 |
| Cow position: | chr2:4622194-4621772 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 259, 97 |
| Conread position: | 106-521 |
| Cow position: | chr2:16287915-16288327 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 138 |
| Conread position: | 124-444 |
| Cow position: | chr2:51306182-51305871 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 233 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 122, 79 |
| Conread position: | 124-489 |
| Cow position: | chr2:22076467-22076836 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 58, 36 |
| Conread position: | 128-489 |
| Cow position: | chr2:6959427-6959789 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 197, 141 |
| Conread position: | 128-520 |
| Cow position: | chr2:41148751-41149138 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 199 |
| Conread position: | 137-514 |
| Cow position: | chr2:6878879-6879245 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 209, 52 |
| Conread position: | 148-519 |
| Cow position: | chr2:1673937-1673574 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 251 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 182, 99 |
| Conread position: | 149-489 |
| Cow position: | chr2:5906108-5905769 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 33, 58 |
| Conread position: | 151-495 |
| Cow position: | chr2:36237696-36238046 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 19, 107 |
| Conread position: | 169-495 |
| Cow position: | chr2:39420282-39420616 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 131, 94 |
| Conread position: | 192-489 |
| Cow position: | chr2:44345500-44345791 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 212, 9 |
| Conread position: | 192-521 |
| Cow position: | chr2:5486199-5485863 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 138, 326 |
| Conread position: | 195-478 |
| Cow position: | chr2:421774-422058 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 15, 53 |
| Conread position: | 197-520 |
| Cow position: | chr2:5481865-5481545 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 171, 50 |
| Conread position: | 207-489 |
| Cow position: | chr2:52153033-52152764 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 6 |
| Conread position: | 207-520 |
| Cow position: | chr2:82164923-82165231 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 195, 40 |
| Conread position: | 209-489 |
| Cow position: | chr2:40244637-40244918 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 106, 38 |
| Conread position: | 211-520 |
| Cow position: | chr2:2102664-2102366 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 168, 36 |
| Conread position: | 214-489 |
| Cow position: | chr2:44166539-44166270 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 155, 33 |
| Conread position: | 224-521 |
| Cow position: | chr2:47605021-47604727 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 209 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 46, 20 |
| Conread position: | 224-521 |
| Cow position: | chr2:49603504-49603807 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 84, 274 |
| Conread position: | 226-489 |
| Cow position: | chr2:976484-976218 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 102, 34 |
| Conread position: | 237-489 |
| Cow position: | chr2:53984340-53984087 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 91, 23 |
| Conread position: | 237-521 |
| Cow position: | chr2:32654131-32654422 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 205 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 269-489 |
| Cow position: | chr2:24921165-24921393 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 29 |
| Conread position: | 288-521 |
| Cow position: | chr2:78740987-78741219 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 42, 123 |
| Conread position: | 319-510 |
| Cow position: | chr2:25244244-25244434 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 55, 85 |
| Conread position: | 322-511 |
| Cow position: | chr2:202784-202591 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 324-521 |
| Cow position: | chr2:36032186-36031987 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 159 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 45, 57 |
| Conread position: | 327-504 |
| Cow position: | chr2:7210313-7210490 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 38, 152 |
| Conread position: | 329-489 |
| Cow position: | chr2:46945433-46945598 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 329-520 |
| Cow position: | chr2:10844444-10844249 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 50, 28 |
| Conread position: | 341-521 |
| Cow position: | chr2:10733931-10733755 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 28, 17 |
| Conread position: | 344-520 |
| Cow position: | chr2:6773347-6773166 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 373-489 |
| Cow position: | chr2:1491472-1491353 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 373-520 |
| Cow position: | chr2:2363091-2363241 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 29, 113 |
| Conread position: | 373-520 |
| Cow position: | chr2:11970089-11969941 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 29, 20 |
| Conread position: | 397-520 |
| Cow position: | chr2:85356801-85356676 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 402-521 |
| Cow position: | chr2:2357502-2357385 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 97, 0 |
Show alignments to all cow chromosomes.