Cow genome map
| Conread name: | rsin14_g1.y1 |
| Conread position: | 1-238 |
| Cow position: | chr21:3983445-3983667 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 50 |
| Conread position: | 1-272 |
| Cow position: | chr21:2542666-2542394 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 12, 118 |
| Conread position: | 1-300 |
| Cow position: | chr21:358049-358359 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 225 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 27, 73 |
| Conread position: | 1-419 |
| Cow position: | chr21:15585753-15585359 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 288 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 20, 62 |
| Conread position: | 1-521 |
| Cow position: | chr21:2415420-2415945 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 46 |
| Conread position: | 1-521 |
| Cow position: | chr21:4590771-4590257 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 46 |
| Conread position: | 2-250 |
| Cow position: | chr21:9890976-9891224 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 20, 133 |
| Conread position: | 3-492 |
| Cow position: | chr21:5016869-5016376 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 17, 42 |
| Conread position: | 7-286 |
| Cow position: | chr21:18821059-18820777 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 17-313 |
| Cow position: | chr21:28873653-28873949 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 272 |
| Conread position: | 62-495 |
| Cow position: | chr21:2453937-2454372 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 272 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 268, 172 |
| Conread position: | 62-495 |
| Cow position: | chr21:11504805-11505241 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 278 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 259, 213 |
| Conread position: | 62-495 |
| Cow position: | chr21:26639238-26638803 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 268, 201 |
| Conread position: | 72-495 |
| Cow position: | chr21:2477282-2476854 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 236, 191 |
| Conread position: | 72-495 |
| Cow position: | chr21:17572155-17572583 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 171, 185 |
| Conread position: | 72-495 |
| Cow position: | chr21:27707987-27708415 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 263 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 225, 190 |
| Conread position: | 72-495 |
| Cow position: | chr21:28530316-28529889 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 258, 191 |
| Conread position: | 72-495 |
| Cow position: | chr21:37044151-37044575 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 258 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 171, 58 |
| Conread position: | 74-495 |
| Cow position: | chr21:4089875-4090302 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 262 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 132, 177 |
| Conread position: | 80-520 |
| Cow position: | chr21:23809025-23809480 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 128 |
| Conread position: | 106-495 |
| Cow position: | chr21:19609375-19609769 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 26, 158 |
| Conread position: | 109-516 |
| Cow position: | chr21:24299514-24299140 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 160-521 |
| Cow position: | chr21:4182885-4183248 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 259 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 167, 196 |
| Conread position: | 195-489 |
| Cow position: | chr21:13124584-13124288 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 115, 52 |
| Conread position: | 195-520 |
| Cow position: | chr21:29085896-29086216 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 9, 54 |
| Conread position: | 198-520 |
| Cow position: | chr21:34259814-34259490 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 11, 50 |
| Conread position: | 207-520 |
| Cow position: | chr21:34292212-34292519 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 162, 40 |
| Conread position: | 209-488 |
| Cow position: | chr21:4076272-4076550 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 99, 38 |
| Conread position: | 209-520 |
| Cow position: | chr21:35595791-35596101 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 160, 38 |
| Conread position: | 211-520 |
| Cow position: | chr21:47938893-47939199 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 96, 36 |
| Conread position: | 217-489 |
| Cow position: | chr21:4455505-4455774 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 152, 30 |
| Conread position: | 226-468 |
| Cow position: | chr21:2884322-2884077 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 63, 32 |
| Conread position: | 227-489 |
| Cow position: | chr21:10566091-10566359 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 62, 33 |
| Conread position: | 252-520 |
| Cow position: | chr21:2717219-2716949 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 264-489 |
| Cow position: | chr21:40272364-40272131 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 44, 34 |
| Conread position: | 297-489 |
| Cow position: | chr21:10849559-10849760 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 73 |
| Conread position: | 329-504 |
| Cow position: | chr21:20745212-20745034 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 88 |
| Conread position: | 329-521 |
| Cow position: | chr21:2542362-2542166 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 155 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 331-511 |
| Cow position: | chr21:18820586-18820402 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 349-521 |
| Cow position: | chr21:2769922-2769747 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 20, 130 |
| Conread position: | 376-521 |
| Cow position: | chr21:41952742-41952890 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 26, 110 |
Show alignments to all cow chromosomes.