Cow genome map
| Conread name: | rsin14_g1.y1 |
| Conread position: | 1-233 |
| Cow position: | chr3:64359366-64359133 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 28, 182 |
| Conread position: | 1-320 |
| Cow position: | chr3:58946649-58946969 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 1-414 |
| Cow position: | chr3:3907995-3907576 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 343 |
| Conread position: | 1-521 |
| Cow position: | chr3:17950603-17951132 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 439 |
| Conread position: | 1-521 |
| Cow position: | chr3:49676693-49677218 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 2-318 |
| Cow position: | chr3:27906489-27906159 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 16, 249 |
| Conread position: | 3-521 |
| Cow position: | chr3:52865808-52865289 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 112 |
| Conread position: | 5-521 |
| Cow position: | chr3:2910130-2909614 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 148 |
| Conread position: | 16-495 |
| Cow position: | chr3:17829717-17829238 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 290 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 12, 56 |
| Conread position: | 17-495 |
| Cow position: | chr3:19937852-19938322 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 303 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 11, 40 |
| Conread position: | 41-495 |
| Cow position: | chr3:7159828-7159372 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 14, 224 |
| Conread position: | 53-344 |
| Cow position: | chr3:15055093-15054815 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 6, 26 |
| Conread position: | 55-241 |
| Cow position: | chr3:60891137-60891321 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 62-489 |
| Cow position: | chr3:6781096-6781527 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 278 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 259, 200 |
| Conread position: | 62-494 |
| Cow position: | chr3:46678941-46678505 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 268, 201 |
| Conread position: | 62-495 |
| Cow position: | chr3:41212775-41212337 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 267, 211 |
| Conread position: | 62-495 |
| Cow position: | chr3:46862326-46861890 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 259, 201 |
| Conread position: | 62-495 |
| Cow position: | chr3:48840624-48841059 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 230, 29 |
| Conread position: | 62-516 |
| Cow position: | chr3:37968062-37968518 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 296 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 100, 76 |
| Conread position: | 64-495 |
| Cow position: | chr3:64649598-64650033 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 211, 198 |
| Conread position: | 72-494 |
| Cow position: | chr3:49614990-49614564 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 258, 191 |
| Conread position: | 72-495 |
| Cow position: | chr3:15990045-15989619 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 259 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 258, 191 |
| Conread position: | 72-495 |
| Cow position: | chr3:22334883-22335309 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 258, 111 |
| Conread position: | 72-495 |
| Cow position: | chr3:24313459-24313887 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 236, 191 |
| Conread position: | 72-495 |
| Cow position: | chr3:32624021-32623594 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 249, 190 |
| Conread position: | 72-495 |
| Cow position: | chr3:72704183-72704606 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 258, 33 |
| Conread position: | 74-495 |
| Cow position: | chr3:14440740-14440318 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 80, 190 |
| Conread position: | 81-250 |
| Cow position: | chr3:3979290-3979459 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 40, 33 |
| Conread position: | 96-490 |
| Cow position: | chr3:39325735-39326135 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 15 |
| Conread position: | 106-495 |
| Cow position: | chr3:36116684-36117075 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 224, 97 |
| Conread position: | 109-495 |
| Cow position: | chr3:2916484-2916878 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 199, 163 |
| Conread position: | 133-470 |
| Cow position: | chr3:48231856-48231521 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 188, 70 |
| Conread position: | 147-521 |
| Cow position: | chr3:63006071-63005682 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 48, 41 |
| Conread position: | 164-521 |
| Cow position: | chr3:19801530-19801887 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 124 |
| Conread position: | 169-495 |
| Cow position: | chr3:64029004-64028674 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 142, 94 |
| Conread position: | 195-489 |
| Cow position: | chr3:5048023-5047727 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 7, 54 |
| Conread position: | 195-489 |
| Cow position: | chr3:31355087-31354795 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 12, 54 |
| Conread position: | 199-489 |
| Cow position: | chr3:207994-207703 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 11, 49 |
| Conread position: | 207-444 |
| Cow position: | chr3:77473960-77474194 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 162, 40 |
| Conread position: | 207-489 |
| Cow position: | chr3:31898787-31898508 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 123, 45 |
| Conread position: | 207-489 |
| Cow position: | chr3:55230532-55230246 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 207-515 |
| Cow position: | chr3:5830452-5830146 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 162, 40 |
| Conread position: | 207-520 |
| Cow position: | chr3:2633096-2633407 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 167, 25 |
| Conread position: | 207-520 |
| Cow position: | chr3:9715979-9716291 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 123, 40 |
| Conread position: | 209-489 |
| Cow position: | chr3:34396876-34396595 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 103, 38 |
| Conread position: | 209-495 |
| Cow position: | chr3:40340842-40340552 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 121, 54 |
| Conread position: | 209-520 |
| Cow position: | chr3:44255804-44255498 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 160, 38 |
| Conread position: | 209-520 |
| Cow position: | chr3:66637218-66637526 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 160, 38 |
| Conread position: | 220-520 |
| Cow position: | chr3:2653294-2653597 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 149, 27 |
| Conread position: | 227-489 |
| Cow position: | chr3:43040514-43040254 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 81, 33 |
| Conread position: | 252-489 |
| Cow position: | chr3:69212162-69211927 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 117, 24 |
| Conread position: | 258-521 |
| Cow position: | chr3:3053829-3054078 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 69, 40 |
| Conread position: | 329-521 |
| Cow position: | chr3:6684730-6684926 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 329-521 |
| Cow position: | chr3:14634814-14634618 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 329-521 |
| Cow position: | chr3:64358899-64358704 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 40, 162 |
| Conread position: | 334-519 |
| Cow position: | chr3:27905988-27905805 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 352-494 |
| Cow position: | chr3:57500231-57500088 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 393-521 |
| Cow position: | chr3:18464418-18464291 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 67, 0 |
Show alignments to all cow chromosomes.