Cow genome map
| Conread name: | rsin14_g1.y1 |
| Conread position: | 1-277 |
| Cow position: | chr5:27061785-27061507 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-489 |
| Cow position: | chr5:32944711-32945215 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 336 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 23, 44 |
| Conread position: | 1-507 |
| Cow position: | chr5:41964077-41963577 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 19 |
| Conread position: | 1-521 |
| Cow position: | chr5:61274329-61273802 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 3-280 |
| Cow position: | chr5:46631703-46631428 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 17, 71 |
| Conread position: | 6-495 |
| Cow position: | chr5:10845059-10844565 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 309 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 14, 53 |
| Conread position: | 10-521 |
| Cow position: | chr5:49594609-49594096 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 124 |
| Conread position: | 12-492 |
| Cow position: | chr5:46006575-46006096 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 306 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 16, 32 |
| Conread position: | 15-488 |
| Cow position: | chr5:3963299-3963773 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 290 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 13, 27 |
| Conread position: | 44-520 |
| Cow position: | chr5:41530679-41530207 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 100 |
| Conread position: | 62-495 |
| Cow position: | chr5:31705444-31705885 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 98, 206 |
| Conread position: | 62-495 |
| Cow position: | chr5:32771348-32771790 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 270 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 268, 201 |
| Conread position: | 62-495 |
| Cow position: | chr5:46774964-46775400 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 267 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 269, 198 |
| Conread position: | 62-495 |
| Cow position: | chr5:47832222-47831785 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 278 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 268, 201 |
| Conread position: | 62-516 |
| Cow position: | chr5:10444327-10443873 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 284 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 262, 196 |
| Conread position: | 63-495 |
| Cow position: | chr5:27910395-27909960 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 69 |
| Conread position: | 72-473 |
| Cow position: | chr5:45183224-45182819 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 258, 191 |
| Conread position: | 72-488 |
| Cow position: | chr5:10777362-10776943 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 216, 66 |
| Conread position: | 72-495 |
| Cow position: | chr5:308699-308271 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 261 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 171, 178 |
| Conread position: | 72-495 |
| Cow position: | chr5:14379049-14379476 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 258, 191 |
| Conread position: | 72-495 |
| Cow position: | chr5:23961224-23960800 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 264 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 219, 71 |
| Conread position: | 72-495 |
| Cow position: | chr5:48469392-48468964 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 221, 190 |
| Conread position: | 72-495 |
| Cow position: | chr5:54936629-54936201 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 261 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 257, 191 |
| Conread position: | 82-521 |
| Cow position: | chr5:29456549-29456989 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 268 |
| Conread position: | 116-490 |
| Cow position: | chr5:28006190-28006566 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 44 |
| Conread position: | 121-521 |
| Cow position: | chr5:32674776-32674369 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 31 |
| Conread position: | 122-402 |
| Cow position: | chr5:12645155-12644881 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 73, 64 |
| Conread position: | 123-489 |
| Cow position: | chr5:4384191-4384561 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 248 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 59, 67 |
| Conread position: | 160-521 |
| Cow position: | chr5:23716940-23716586 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 44 |
| Conread position: | 175-489 |
| Cow position: | chr5:46662990-46663307 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 155, 36 |
| Conread position: | 178-495 |
| Cow position: | chr5:4020206-4019890 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 25, 29 |
| Conread position: | 183-514 |
| Cow position: | chr5:12682479-12682143 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 237 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 195-520 |
| Cow position: | chr5:45699073-45699396 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 12, 54 |
| Conread position: | 207-487 |
| Cow position: | chr5:27569259-27569539 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 103, 40 |
| Conread position: | 207-489 |
| Cow position: | chr5:28030570-28030849 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 7, 40 |
| Conread position: | 207-489 |
| Cow position: | chr5:41551845-41551561 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 7, 15 |
| Conread position: | 207-520 |
| Cow position: | chr5:27652893-27652586 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 162, 40 |
| Conread position: | 207-521 |
| Cow position: | chr5:46658761-46659068 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 233 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 8, 99 |
| Conread position: | 209-489 |
| Cow position: | chr5:52804419-52804690 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 159, 38 |
| Conread position: | 226-489 |
| Cow position: | chr5:49120207-49119941 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 63, 33 |
| Conread position: | 226-489 |
| Cow position: | chr5:49123756-49123492 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 63, 34 |
| Conread position: | 227-489 |
| Cow position: | chr5:2913522-2913786 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 33 |
| Conread position: | 227-489 |
| Cow position: | chr5:34695656-34695921 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 101, 33 |
| Conread position: | 236-496 |
| Cow position: | chr5:58195051-58195311 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 85, 39 |
| Conread position: | 250-520 |
| Cow position: | chr5:26768914-26769188 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 64, 55 |
| Conread position: | 258-489 |
| Cow position: | chr5:32734115-32733885 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 119, 97 |
| Conread position: | 277-489 |
| Cow position: | chr5:55150150-55149938 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 329-488 |
| Cow position: | chr5:39165598-39165435 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 329-495 |
| Cow position: | chr5:2530414-2530584 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 340-489 |
| Cow position: | chr5:13607577-13607424 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 395-520 |
| Cow position: | chr5:34202204-34202327 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 424-521 |
| Cow position: | chr5:12901800-12901704 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 82 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
Show alignments to all cow chromosomes.