Cow genome map
| Conread name: | rsin14_g1.y1 |
| Conread position: | 1-313 |
| Cow position: | chr6:4905193-4904883 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 63 |
| Conread position: | 1-521 |
| Cow position: | chr6:12093872-12093356 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 86 |
| Conread position: | 4-153 |
| Cow position: | chr6:26490693-26490846 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 10-495 |
| Cow position: | chr6:28062322-28062801 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 309 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 18, 36 |
| Conread position: | 17-495 |
| Cow position: | chr6:68025751-68026231 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 301 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 11, 41 |
| Conread position: | 18-521 |
| Cow position: | chr6:6477440-6476953 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 78 |
| Conread position: | 28-298 |
| Cow position: | chr6:65901030-65900767 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 32-495 |
| Cow position: | chr6:21837131-21836662 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 298 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 54, 11 |
| Conread position: | 47-398 |
| Cow position: | chr6:22852920-22852568 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 250 |
| Conread position: | 62-489 |
| Cow position: | chr6:39907170-39907600 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 268, 201 |
| Conread position: | 62-495 |
| Cow position: | chr6:332465-332029 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 281 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 260, 200 |
| Conread position: | 62-495 |
| Cow position: | chr6:2553727-2554161 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 268, 61 |
| Conread position: | 62-495 |
| Cow position: | chr6:7142446-7142015 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 268, 201 |
| Conread position: | 62-495 |
| Cow position: | chr6:13846084-13846518 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 308, 61 |
| Conread position: | 62-495 |
| Cow position: | chr6:17599263-17598831 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 268, 201 |
| Conread position: | 62-495 |
| Cow position: | chr6:26671852-26671415 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 278 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 268, 201 |
| Conread position: | 72-468 |
| Cow position: | chr6:65823073-65822674 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 258, 191 |
| Conread position: | 72-495 |
| Cow position: | chr6:13977567-13977992 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 260 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 171, 178 |
| Conread position: | 72-495 |
| Cow position: | chr6:27168601-27169026 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 258, 37 |
| Conread position: | 72-495 |
| Cow position: | chr6:44028080-44028507 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 258, 191 |
| Conread position: | 79-521 |
| Cow position: | chr6:38231332-38231776 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 81 |
| Conread position: | 106-495 |
| Cow position: | chr6:13942958-13943349 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 47, 37 |
| Conread position: | 122-489 |
| Cow position: | chr6:66230928-66231293 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 239 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 73, 67 |
| Conread position: | 145-489 |
| Cow position: | chr6:62829768-62829422 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 83, 68 |
| Conread position: | 146-495 |
| Cow position: | chr6:41757887-41757534 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 97, 111 |
| Conread position: | 151-495 |
| Cow position: | chr6:6936025-6935675 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 19, 135 |
| Conread position: | 169-495 |
| Cow position: | chr6:40314037-40314367 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 154, 15 |
| Conread position: | 192-521 |
| Cow position: | chr6:47958258-47958584 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 132 |
| Conread position: | 207-520 |
| Cow position: | chr6:19453137-19453450 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 162, 40 |
| Conread position: | 209-489 |
| Cow position: | chr6:13275789-13276065 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 160, 36 |
| Conread position: | 219-521 |
| Cow position: | chr6:11278489-11278187 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 111, 72 |
| Conread position: | 226-489 |
| Cow position: | chr6:5952025-5951758 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 63, 34 |
| Conread position: | 226-489 |
| Cow position: | chr6:27530784-27530518 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 73, 34 |
| Conread position: | 227-489 |
| Cow position: | chr6:15141951-15141693 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 81, 33 |
| Conread position: | 236-489 |
| Cow position: | chr6:912854-913108 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 249-489 |
| Cow position: | chr6:42926636-42926880 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 121, 133 |
| Conread position: | 266-488 |
| Cow position: | chr6:36525292-36525521 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 32 |
| Conread position: | 266-489 |
| Cow position: | chr6:2111701-2111476 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 23, 33 |
| Conread position: | 266-489 |
| Cow position: | chr6:24238296-24238528 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 33 |
| Conread position: | 269-489 |
| Cow position: | chr6:3489143-3488915 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 20, 30 |
| Conread position: | 284-495 |
| Cow position: | chr6:65926950-65927162 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 81, 12 |
| Conread position: | 325-521 |
| Cow position: | chr6:4904741-4904547 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 49, 101 |
| Conread position: | 341-489 |
| Cow position: | chr6:2401592-2401744 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 355-521 |
| Cow position: | chr6:30478424-30478596 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 373-511 |
| Cow position: | chr6:37477591-37477732 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
Show alignments to all cow chromosomes.