Cow genome map

Conread name: rsin14_g1.y1

Conread position: 1-228
Cow position: chrX:28548152-28548380 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 152
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 20, 218

Conread position: 1-240
Cow position: chrX:6284377-6284135 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 177
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 14, 0

Conread position: 1-278
Cow position: chrX:6361946-6361669 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 195
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 13, 48

Conread position: 1-394
Cow position: chrX:35015696-35016088 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 268
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 19, 65

Conread position: 1-399
Cow position: chrX:21791523-21791928 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 146

Conread position: 1-484
Cow position: chrX:28652275-28651796 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 45

Conread position: 1-495
Cow position: chrX:22584135-22583637 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 269

Conread position: 1-521
Cow position: chrX:28552843-28553360 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 38

Conread position: 2-495
Cow position: chrX:31371787-31372273 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 35

Conread position: 3-495
Cow position: chrX:30190586-30190095 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 306
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 11, 48

Conread position: 3-521
Cow position: chrX:21585837-21586362 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 261

Conread position: 3-521
Cow position: chrX:29795284-29794765 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 44

Conread position: 4-185
Cow position: chrX:42450627-42450445 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 10, 75

Conread position: 4-417
Cow position: chrX:2537588-2537177 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 212

Conread position: 6-495
Cow position: chrX:28759831-28759335 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 314
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 8, 53

Conread position: 7-480
Cow position: chrX:25041605-25041134 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 365

Conread position: 13-521
Cow position: chrX:31034534-31035038 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 6

Conread position: 16-495
Cow position: chrX:2100669-2101152 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 270
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 305, 246

Conread position: 17-489
Cow position: chrX:17479718-17479244 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 294
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 11, 25

Conread position: 17-495
Cow position: chrX:978420-978906 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 292
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 10, 41

Conread position: 17-495
Cow position: chrX:3422637-3422155 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 296
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 11, 36

Conread position: 17-495
Cow position: chrX:7092416-7092891 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 302
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 11, 41

Conread position: 17-495
Cow position: chrX:27427515-27427033 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 302
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 11, 41

Conread position: 51-495
Cow position: chrX:27991149-27990703 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 277
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 279, 9

Conread position: 62-489
Cow position: chrX:5862245-5862676 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 266
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 268, 201

Conread position: 62-494
Cow position: chrX:28507090-28506654 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 263
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 259, 200

Conread position: 62-495
Cow position: chrX:2602900-2603335 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 271
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 175, 202

Conread position: 62-495
Cow position: chrX:13032576-13032143 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 277
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 259, 200

Conread position: 62-495
Cow position: chrX:22526755-22526318 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 276
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 268, 201

Conread position: 62-495
Cow position: chrX:29174748-29174312 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 276
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 268, 201

Conread position: 64-496
Cow position: chrX:31188377-31187948 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 264
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 266, 113

Conread position: 70-495
Cow position: chrX:8585951-8586381 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 267
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 12, 124

Conread position: 72-489
Cow position: chrX:12281396-12280977 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 248
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 258, 191

Conread position: 72-495
Cow position: chrX:3086039-3085614 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 264
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 258, 168

Conread position: 72-495
Cow position: chrX:6576555-6576982 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 274
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 202, 76

Conread position: 72-495
Cow position: chrX:12655890-12655462 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 264
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 236, 191

Conread position: 72-495
Cow position: chrX:12804994-12804567 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 260
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 258, 191

Conread position: 72-495
Cow position: chrX:13077832-13077405 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 263
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 258, 191

Conread position: 72-495
Cow position: chrX:13098406-13097979 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 262
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 258, 191

Conread position: 72-495
Cow position: chrX:13399255-13398829 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 259
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 236, 111

Conread position: 72-495
Cow position: chrX:14050938-14051366 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 260
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 171, 178

Conread position: 72-495
Cow position: chrX:14787995-14787569 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 264
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 258, 191

Conread position: 72-495
Cow position: chrX:16564732-16565157 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 267
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 258, 191

Conread position: 72-495
Cow position: chrX:18218263-18218686 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 267
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 226, 191

Conread position: 72-495
Cow position: chrX:20361073-20360646 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 262
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 191, 212

Conread position: 72-495
Cow position: chrX:21305652-21305229 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 259
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 66, 78

Conread position: 72-495
Cow position: chrX:21339260-21339687 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 267
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 256, 191

Conread position: 72-495
Cow position: chrX:22610171-22610595 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 255
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 250, 191

Conread position: 72-495
Cow position: chrX:24326287-24325859 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 263
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 221, 190

Conread position: 72-495
Cow position: chrX:26401608-26401182 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 267
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 250, 191

Conread position: 72-495
Cow position: chrX:27973351-27972924 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 258
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 221, 190

Conread position: 72-495
Cow position: chrX:29934291-29934719 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 259
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 221, 190

Conread position: 72-495
Cow position: chrX:30174984-30174557 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 260
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 258, 120

Conread position: 72-496
Cow position: chrX:30009814-30010243 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 258
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 236, 191

Conread position: 72-516
Cow position: chrX:1832733-1833181 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 275
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 249, 190

Conread position: 99-304
Cow position: chrX:17670038-17669838 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 140
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 99-495
Cow position: chrX:12341080-12341480 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 245
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 231, 164

Conread position: 99-514
Cow position: chrX:16018205-16017801 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 163

Conread position: 102-480
Cow position: chrX:22620414-22620041 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 234
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 138, 132

Conread position: 102-495
Cow position: chrX:24088282-24088689 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 262
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 121, 116

Conread position: 106-495
Cow position: chrX:28635645-28635264 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 255
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 29, 57

Conread position: 111-516
Cow position: chrX:8478612-8479019 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 255
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 258, 152

Conread position: 123-462
Cow position: chrX:27493379-27493715 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 220
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 207, 60

Conread position: 123-489
Cow position: chrX:26768258-26767885 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 244
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 178, 146

Conread position: 125-492
Cow position: chrX:21489145-21489520 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 242
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 104, 147

Conread position: 127-492
Cow position: chrX:24485497-24485130 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 217
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 181, 94

Conread position: 151-495
Cow position: chrX:39520841-39521191 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 221
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 19, 107

Conread position: 154-489
Cow position: chrX:9901646-9901299 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 233
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 28, 76

Conread position: 183-495
Cow position: chrX:5284758-5284441 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 199
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 125, 80

Conread position: 207-487
Cow position: chrX:21633525-21633249 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 185
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 162, 40

Conread position: 207-488
Cow position: chrX:28605034-28604757 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 195
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 103, 40

Conread position: 207-520
Cow position: chrX:25332127-25332436 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 213
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 123, 40

Conread position: 207-520
Cow position: chrX:35016870-35017184 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 219
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 162, 40

Conread position: 209-489
Cow position: chrX:26504225-26504499 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 189
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 160, 38

Conread position: 209-490
Cow position: chrX:24274731-24275006 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 180
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 160, 38

Conread position: 211-520
Cow position: chrX:21601935-21602241 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 210
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 158, 36

Conread position: 226-489
Cow position: chrX:23276167-23276431 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 182
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 63, 33

Conread position: 236-520
Cow position: chrX:29283786-29284073 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 206

Conread position: 252-489
Cow position: chrX:39716903-39717139 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 166
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 116, 0

Conread position: 295-489
Cow position: chrX:25186771-25186972 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 142
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 13, 73

Conread position: 295-521
Cow position: chrX:30144385-30144155 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 164
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 35, 139

Conread position: 307-489
Cow position: chrX:318210-318399 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 135
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 23, 168

Conread position: 311-489
Cow position: chrX:22777471-22777655 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 58, 0

Conread position: 311-521
Cow position: chrX:16236451-16236660 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 17, 58

Conread position: 312-489
Cow position: chrX:23392473-23392288 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 329-520
Cow position: chrX:30990793-30990596 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 149
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 44, 0

Conread position: 335-503
Cow position: chrX:17669249-17669080 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 34, 0

Conread position: 335-520
Cow position: chrX:11534647-11534838 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 335-520
Cow position: chrX:30046952-30046763 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 34, 0

Conread position: 341-488
Cow position: chrX:26759430-26759280 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 343-489
Cow position: chrX:15598092-15598241 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 109
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 343-520
Cow position: chrX:21290315-21290133 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 344-520
Cow position: chrX:40057886-40057707 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 62, 0

Conread position: 355-521
Cow position: chrX:6284049-6283879 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 14, 0

Conread position: 371-519
Cow position: chrX:35019848-35019994 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 31, 0

Conread position: 373-520
Cow position: chrX:13007426-13007276 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 29, 62

Conread position: 395-521
Cow position: chrX:11669217-11669091 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 414-520
Cow position: chrX:22813628-22813733 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 86, 0

Show alignments to all cow chromosomes.