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Cow genome map

           
Conread name:
           
rsin35_c10.y1
        

               
Conread position:
               
93-315
               

               
Cow position:
               
chr1:44678571-44678346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
53, 198
               

               
Conread position:
               
95-220
               

               
Cow position:
               
chr1:8778087-8778209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
54, 17
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr1:14106358-14106589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
94, 33
               

               
Conread position:
               
102-230
               

               
Cow position:
               
chr1:69442266-69442396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
102-294
               

               
Cow position:
               
chr1:99023758-99023951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
87, 47
               

               
Conread position:
               
102-346
               

               
Cow position:
               
chr1:57331211-57331458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
27, 42
               

               
Conread position:
               
102-357
               

               
Cow position:
               
chr1:45873795-45874049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
18, 126
               

               
Conread position:
               
103-226
               

               
Cow position:
               
chr1:46245490-46245615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
87, 40
               

               
Conread position:
               
103-356
               

               
Cow position:
               
chr1:48213899-48214141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
43, 22
               

               
Conread position:
               
104-263
               

               
Cow position:
               
chr1:26069810-26069968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
86, 51
               

               
Conread position:
               
105-314
               

               
Cow position:
               
chr1:45552965-45553184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
112-226
               

               
Cow position:
               
chr1:5240757-5240875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
112-239
               

               
Cow position:
               
chr1:196767-196897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 17
               

               
Conread position:
               
112-250
               

               
Cow position:
               
chr1:80422868-80422731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
76, 31
               

               
Conread position:
               
112-280
               

               
Cow position:
               
chr1:65530787-65530960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
112-280
               

               
Cow position:
               
chr1:65546639-65546808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
78, 144
               

               
Conread position:
               
112-313
               

               
Cow position:
               
chr1:92095622-92095425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
34, 63
               

               
Conread position:
               
112-315
               

               
Cow position:
               
chr1:15167681-15167881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
22, 63
               

               
Conread position:
               
112-350
               

               
Cow position:
               
chr1:33206639-33206858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
114-312
               

               
Cow position:
               
chr1:84238862-84239062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
28, 44
               

               
Conread position:
               
115-336
               

               
Cow position:
               
chr1:50992195-50991970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
118-350
               

               
Cow position:
               
chr1:85712696-85712463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
23, 139
               

               
Conread position:
               
120-226
               

               
Cow position:
               
chr1:54156502-54156611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
120-354
               

               
Cow position:
               
chr1:96136713-96136486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
26, 90
               

               
Conread position:
               
121-236
               

               
Cow position:
               
chr1:95966246-95966359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 94
               

               
Conread position:
               
122-331
               

               
Cow position:
               
chr1:98551972-98551762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
10, 40
               

               
Conread position:
               
122-350
               

               
Cow position:
               
chr1:77683607-77683375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
22, 146
               

               
Conread position:
               
124-332
               

               
Cow position:
               
chr1:68844932-68845128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
66, 18
               

               
Conread position:
               
124-350
               

               
Cow position:
               
chr1:16961770-16961987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
66, 13
               

               
Conread position:
               
125-301
               

               
Cow position:
               
chr1:81613708-81613527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
65, 157
               

               
Conread position:
               
125-332
               

               
Cow position:
               
chr1:85162306-85162506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
65, 16
               

               
Conread position:
               
126-243
               

               
Cow position:
               
chr1:46220958-46221075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
21, 43
               

               
Conread position:
               
126-249
               

               
Cow position:
               
chr1:6066668-6066794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
126-259
               

               
Cow position:
               
chr1:70226597-70226728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
64, 14
               

               
Conread position:
               
126-313
               

               
Cow position:
               
chr1:51654899-51654708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
25, 93
               

               
Conread position:
               
126-314
               

               
Cow position:
               
chr1:92369976-92369797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
16, 32
               

               
Conread position:
               
126-343
               

               
Cow position:
               
chr1:95153468-95153251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 17
               

               
Conread position:
               
126-350
               

               
Cow position:
               
chr1:86383567-86383783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
14, 54
               

               
Conread position:
               
127-250
               

               
Cow position:
               
chr1:57359745-57359620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
127-304
               

               
Cow position:
               
chr1:23282801-23282628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
13, 52
               

               
Conread position:
               
127-331
               

               
Cow position:
               
chr1:71253310-71253514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
14, 91
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr1:49299910-49299688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
63, 136
               

               
Conread position:
               
128-230
               

               
Cow position:
               
chr1:54267717-54267821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 15
               

               
Conread position:
               
128-315
               

               
Cow position:
               
chr1:51469777-51469600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
5, 32
               

               
Conread position:
               
128-347
               

               
Cow position:
               
chr1:24777762-24777967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
60, 78
               

               
Conread position:
               
128-347
               

               
Cow position:
               
chr1:40530863-40531077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
65, 53
               

               
Conread position:
               
129-239
               

               
Cow position:
               
chr1:84813250-84813140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
61, 20
               

               
Conread position:
               
129-319
               

               
Cow position:
               
chr1:69911332-69911156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
61, 14
               

               
Conread position:
               
129-331
               

               
Cow position:
               
chr1:101208084-101207887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
61, 55
               

               
Conread position:
               
129-347
               

               
Cow position:
               
chr1:53540808-53540599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
22, 82
               

               
Conread position:
               
129-350
               

               
Cow position:
               
chr1:54732235-54732462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
23, 51
               

               
Conread position:
               
130-224
               

               
Cow position:
               
chr1:22466625-22466720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
130-227
               

               
Cow position:
               
chr1:72142074-72141976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
130-228
               

               
Cow position:
               
chr1:43340412-43340512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
130-228
               

               
Cow position:
               
chr1:78079942-78079844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
59, 13
               

               
Conread position:
               
130-229
               

               
Cow position:
               
chr1:89146652-89146752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
130-230
               

               
Cow position:
               
chr1:3685809-3685708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
130-230
               

               
Cow position:
               
chr1:24876736-24876635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
130-230
               

               
Cow position:
               
chr1:69411474-69411575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
130-230
               

               
Cow position:
               
chr1:95153093-95152993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
58, 13
               

               
Conread position:
               
130-233
               

               
Cow position:
               
chr1:34767514-34767410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
130-238
               

               
Cow position:
               
chr1:81568811-81568918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
60, 18
               

               
Conread position:
               
130-239
               

               
Cow position:
               
chr1:93235293-93235402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
60, 19
               

               
Conread position:
               
130-250
               

               
Cow position:
               
chr1:83783439-83783558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
60, 13
               

               
Conread position:
               
130-259
               

               
Cow position:
               
chr1:81477644-81477773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
60, 11
               

               
Conread position:
               
130-263
               

               
Cow position:
               
chr1:59698869-59698736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
60, 10
               

               
Conread position:
               
130-279
               

               
Cow position:
               
chr1:50287581-50287739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
130-281
               

               
Cow position:
               
chr1:24132841-24132995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
16, 148
               

               
Conread position:
               
130-315
               

               
Cow position:
               
chr1:69176517-69176694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
60, 76
               

               
Conread position:
               
130-331
               

               
Cow position:
               
chr1:68672356-68672560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
67, 56
               

               
Conread position:
               
130-334
               

               
Cow position:
               
chr1:65103849-65103659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
59, 88
               

               
Conread position:
               
130-336
               

               
Cow position:
               
chr1:53671509-53671713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
60, 49
               

               
Conread position:
               
130-336
               

               
Cow position:
               
chr1:68400047-68400250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
8, 86
               

               
Conread position:
               
130-336
               

               
Cow position:
               
chr1:92684460-92684657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
21, 84
               

               
Conread position:
               
130-340
               

               
Cow position:
               
chr1:98684119-98683903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
130-343
               

               
Cow position:
               
chr1:8624205-8624420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
14, 133
               

               
Conread position:
               
130-345
               

               
Cow position:
               
chr1:1875633-1875415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
15, 51
               

               
Conread position:
               
130-345
               

               
Cow position:
               
chr1:67304986-67305212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
51, 23
               

               
Conread position:
               
130-347
               

               
Cow position:
               
chr1:3417599-3417381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
13, 132
               

               
Conread position:
               
130-349
               

               
Cow position:
               
chr1:22448022-22448231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
59, 82
               

               
Conread position:
               
130-350
               

               
Cow position:
               
chr1:18547731-18547959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
60, 19
               

               
Conread position:
               
130-350
               

               
Cow position:
               
chr1:18549869-18550097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
60, 19
               

               
Conread position:
               
130-354
               

               
Cow position:
               
chr1:32857281-32857057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
58, 13
               

               
Conread position:
               
130-354
               

               
Cow position:
               
chr1:83004885-83004668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
60, 79
               

               
Conread position:
               
131-224
               

               
Cow position:
               
chr1:41022634-41022541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
58, 12
               

               
Conread position:
               
131-250
               

               
Cow position:
               
chr1:65883435-65883313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
131-263
               

               
Cow position:
               
chr1:85688404-85688273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
131-331
               

               
Cow position:
               
chr1:38544027-38544213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
59, 77
               

               
Conread position:
               
131-331
               

               
Cow position:
               
chr1:98402811-98402611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
59, 130
               

               
Conread position:
               
131-347
               

               
Cow position:
               
chr1:23055279-23055073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
195, 60
               

               
Conread position:
               
131-359
               

               
Cow position:
               
chr1:55110721-55110508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
58, 74
               

               
Conread position:
               
132-220
               

               
Cow position:
               
chr1:21027722-21027811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
90
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
132-225
               

               
Cow position:
               
chr1:72422188-72422282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
132-226
               

               
Cow position:
               
chr1:22824127-22824031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
97
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
132-265
               

               
Cow position:
               
chr1:26447965-26447828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
56, 74
               

               
Conread position:
               
132-300
               

               
Cow position:
               
chr1:79630700-79630867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 61
               

               
Conread position:
               
132-305
               

               
Cow position:
               
chr1:40206866-40207042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
132-336
               

               
Cow position:
               
chr1:79844697-79844502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
58, 98
               

               
Conread position:
               
132-340
               

               
Cow position:
               
chr1:21836177-21835964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
58, 10
               

               
Conread position:
               
132-340
               

               
Cow position:
               
chr1:86340240-86340435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
132-350
               

               
Cow position:
               
chr1:8347370-8347146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
132-350
               

               
Cow position:
               
chr1:19304818-19304595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
58, 191
               

               
Conread position:
               
132-350
               

               
Cow position:
               
chr1:43148319-43148522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 22
               

               
Conread position:
               
132-350
               

               
Cow position:
               
chr1:55194012-55194223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
132-350
               

               
Cow position:
               
chr1:65909762-65909534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
50, 147
               

               
Conread position:
               
132-350
               

               
Cow position:
               
chr1:90975858-90976065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
58, 98
               

               
Conread position:
               
132-350
               

               
Cow position:
               
chr1:98461533-98461309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
132-359
               

               
Cow position:
               
chr1:69265045-69264822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 33
               

               
Conread position:
               
133-350
               

               
Cow position:
               
chr1:24656471-24656268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
58, 10
               

               
Conread position:
               
133-365
               

               
Cow position:
               
chr1:6986510-6986735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
57, 8
               

               
Conread position:
               
134-230
               

               
Cow position:
               
chr1:4391053-4391149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
56, 9
               

               
Conread position:
               
134-314
               

               
Cow position:
               
chr1:17317126-17317301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
16, 96
               

               
Conread position:
               
135-251
               

               
Cow position:
               
chr1:10636969-10636850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
135-358
               

               
Cow position:
               
chr1:5023520-5023747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
17, 97
               

               
Conread position:
               
136-309
               

               
Cow position:
               
chr1:59020885-59020716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
15, 43
               

               
Conread position:
               
136-350
               

               
Cow position:
               
chr1:73719683-73719484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
54, 7
               

               
Conread position:
               
136-357
               

               
Cow position:
               
chr1:47883381-47883600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
53, 112
               

               
Conread position:
               
137-222
               

               
Cow position:
               
chr1:75250325-75250240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
86
               

               
Alignm identity:
               
75
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
137-244
               

               
Cow position:
               
chr1:42179524-42179418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
53, 11
               

               
Conread position:
               
137-250
               

               
Cow position:
               
chr1:89835734-89835621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
53, 12
               

               
Conread position:
               
137-307
               

               
Cow position:
               
chr1:2935380-2935222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
13, 106
               

               
Conread position:
               
137-314
               

               
Cow position:
               
chr1:34692573-34692404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
6, 41
               

               
Conread position:
               
137-336
               

               
Cow position:
               
chr1:42537089-42537286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
51, 12
               

               
Conread position:
               
137-336
               

               
Cow position:
               
chr1:92999261-92999068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
53, 11
               

               
Conread position:
               
137-350
               

               
Cow position:
               
chr1:11226015-11226223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
8, 84
               

               
Conread position:
               
137-351
               

               
Cow position:
               
chr1:6963120-6962912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
12, 38
               

               
Conread position:
               
138-236
               

               
Cow position:
               
chr1:67346369-67346271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
52, 43
               

               
Conread position:
               
138-238
               

               
Cow position:
               
chr1:64572726-64572625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
138-313
               

               
Cow position:
               
chr1:816185-816352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
52, 97
               

               
Conread position:
               
138-335
               

               
Cow position:
               
chr1:60478481-60478673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
52, 74
               

               
Conread position:
               
138-348
               

               
Cow position:
               
chr1:77892379-77892160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
138-350
               

               
Cow position:
               
chr1:81580422-81580201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
18, 194
               

               
Conread position:
               
139-286
               

               
Cow position:
               
chr1:92384528-92384374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
50, 152
               

               
Conread position:
               
139-343
               

               
Cow position:
               
chr1:78067839-78068040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
199, 97
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr1:75080328-75080526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
51, 108
               

               
Conread position:
               
140-258
               

               
Cow position:
               
chr1:102529643-102529759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
50, 75
               

               
Conread position:
               
140-269
               

               
Cow position:
               
chr1:43144547-43144420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
50, 95
               

               
Conread position:
               
140-301
               

               
Cow position:
               
chr1:32215258-32215417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
49, 96
               

               
Conread position:
               
140-350
               

               
Cow position:
               
chr1:98576284-98576070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
112, 36
               

               
Conread position:
               
141-250
               

               
Cow position:
               
chr1:26157885-26157996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
10, 74
               

               
Conread position:
               
141-336
               

               
Cow position:
               
chr1:37886578-37886775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
47, 116
               

               
Conread position:
               
141-359
               

               
Cow position:
               
chr1:23180315-23180107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
49, 40
               

               
Conread position:
               
142-296
               

               
Cow position:
               
chr1:61030995-61030833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
142-340
               

               
Cow position:
               
chr1:99221134-99221322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
142-350
               

               
Cow position:
               
chr1:74832636-74832445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 82
               

               
Conread position:
               
143-230
               

               
Cow position:
               
chr1:8287423-8287511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
89
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
143-311
               

               
Cow position:
               
chr1:8359674-8359850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
46, 170
               

               
Conread position:
               
143-336
               

               
Cow position:
               
chr1:72356575-72356393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
47, 91
               

               
Conread position:
               
143-343
               

               
Cow position:
               
chr1:80336010-80336220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
47, 34
               

               
Conread position:
               
143-343
               

               
Cow position:
               
chr1:83748175-83747972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
48, 182
               

               
Conread position:
               
143-347
               

               
Cow position:
               
chr1:45478638-45478837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
47, 34
               

               
Conread position:
               
143-347
               

               
Cow position:
               
chr1:56128584-56128788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 112
               

               
Conread position:
               
143-348
               

               
Cow position:
               
chr1:64329139-64328943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
47, 30
               

               
Conread position:
               
143-361
               

               
Cow position:
               
chr1:76081044-76080818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
47, 178
               

               
Conread position:
               
144-289
               

               
Cow position:
               
chr1:95101157-95101022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
46, 71
               

               
Conread position:
               
144-339
               

               
Cow position:
               
chr1:95082115-95082313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
46, 134
               

               
Conread position:
               
144-343
               

               
Cow position:
               
chr1:88360091-88359907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
46, 73
               

               
Conread position:
               
145-295
               

               
Cow position:
               
chr1:98605499-98605642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
45, 70
               

               
Conread position:
               
145-343
               

               
Cow position:
               
chr1:70292008-70291816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
44, 76
               

               
Conread position:
               
145-353
               

               
Cow position:
               
chr1:89341750-89341960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
145-359
               

               
Cow position:
               
chr1:76657843-76658053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
11, 99
               

               
Conread position:
               
147-250
               

               
Cow position:
               
chr1:9181890-9181786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
147-343
               

               
Cow position:
               
chr1:3431138-3431331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
42, 105
               

               
Conread position:
               
147-347
               

               
Cow position:
               
chr1:8670991-8670799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
147-347
               

               
Cow position:
               
chr1:84010991-84010798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
43, 32
               

               
Conread position:
               
147-357
               

               
Cow position:
               
chr1:98594794-98594579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
43, 117
               

               
Conread position:
               
148-319
               

               
Cow position:
               
chr1:100770512-100770681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
148-336
               

               
Cow position:
               
chr1:42404351-42404172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
42, 62
               

               
Conread position:
               
149-244
               

               
Cow position:
               
chr1:24445378-24445474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
97
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
149-298
               

               
Cow position:
               
chr1:57297709-57297565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
41, 64
               

               
Conread position:
               
149-331
               

               
Cow position:
               
chr1:45670843-45670674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
150-327
               

               
Cow position:
               
chr1:6398304-6398473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
40, 68
               

               
Conread position:
               
151-350
               

               
Cow position:
               
chr1:42822492-42822294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
89, 28
               

               
Conread position:
               
153-250
               

               
Cow position:
               
chr1:89920703-89920605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
153-347
               

               
Cow position:
               
chr1:3962479-3962661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
156-354
               

               
Cow position:
               
chr1:98708842-98708648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 105
               

               
Conread position:
               
158-330
               

               
Cow position:
               
chr1:83783707-83783887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
158-336
               

               
Cow position:
               
chr1:40238775-40238604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
29, 45
               

               
Conread position:
               
158-336
               

               
Cow position:
               
chr1:82884184-82884356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 48
               

               
Conread position:
               
159-350
               

               
Cow position:
               
chr1:98512128-98511950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
31, 9
               

               
Conread position:
               
159-355
               

               
Cow position:
               
chr1:48730617-48730814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
160-337
               

               
Cow position:
               
chr1:97806916-97806746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
29, 76
               

               
Conread position:
               
164-346
               

               
Cow position:
               
chr1:36613058-36613234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 67
               

               
Conread position:
               
168-316
               

               
Cow position:
               
chr1:98360195-98360347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
179-350
               

               
Cow position:
               
chr1:18780129-18780306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
186-344
               

               
Cow position:
               
chr1:99024044-99024202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
25, 75
               

               
Conread position:
               
189-330
               

               
Cow position:
               
chr1:81452534-81452396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
193-350
               

               
Cow position:
               
chr1:90868261-90868418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
77, 11
               

               
Conread position:
               
201-340
               

               
Cow position:
               
chr1:50843679-50843819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
204-348
               

               
Cow position:
               
chr1:101834985-101834840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
207-350
               

               
Cow position:
               
chr1:68127024-68127167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
210-314
               

               
Cow position:
               
chr1:49496976-49497079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
210-331
               

               
Cow position:
               
chr1:80306213-80306336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
210-337
               

               
Cow position:
               
chr1:49358212-49358084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
211-347
               

               
Cow position:
               
chr1:77880570-77880708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
213-356
               

               
Cow position:
               
chr1:34318627-34318767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
215-315
               

               
Cow position:
               
chr1:70001679-70001778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
220-347
               

               
Cow position:
               
chr1:46100688-46100814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
235-343
               

               
Cow position:
               
chr1:70416622-70416731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
103, 0
               
Show alignments to all cow chromosomes.