Cow genome map
| Conread name: | rsin35_c10.y1 |
| Conread position: | 94-331 |
| Cow position: | chr20:9923884-9923646 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 52, 28 |
| Conread position: | 96-271 |
| Cow position: | chr20:23591195-23591363 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 97-343 |
| Cow position: | chr20:34202931-34202701 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 94, 19 |
| Conread position: | 97-350 |
| Cow position: | chr20:20056165-20056425 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 54, 30 |
| Conread position: | 112-350 |
| Cow position: | chr20:17369970-17370189 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 77, 111 |
| Conread position: | 116-311 |
| Cow position: | chr20:4315459-4315263 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 29, 103 |
| Conread position: | 121-343 |
| Cow position: | chr20:36842854-36842642 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 30, 92 |
| Conread position: | 125-337 |
| Cow position: | chr20:36023094-36023327 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 126-335 |
| Cow position: | chr20:31078047-31077856 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 65, 51 |
| Conread position: | 126-343 |
| Cow position: | chr20:23870538-23870753 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 171 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 63, 11 |
| Conread position: | 126-350 |
| Cow position: | chr20:15847042-15846815 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 128-305 |
| Cow position: | chr20:16613176-16613012 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 21 |
| Conread position: | 128-343 |
| Cow position: | chr20:7622698-7622915 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 92, 42 |
| Conread position: | 128-350 |
| Cow position: | chr20:21721477-21721270 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 62, 15 |
| Conread position: | 129-230 |
| Cow position: | chr20:11909427-11909528 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 61, 36 |
| Conread position: | 129-249 |
| Cow position: | chr20:10788657-10788777 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 130-222 |
| Cow position: | chr20:40126600-40126693 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 80 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 130-286 |
| Cow position: | chr20:40431960-40431801 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 130-293 |
| Cow position: | chr20:24310684-24310843 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 60, 111 |
| Conread position: | 130-301 |
| Cow position: | chr20:5061416-5061238 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 158 |
| Conread position: | 130-302 |
| Cow position: | chr20:15199240-15199074 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 11, 107 |
| Conread position: | 130-333 |
| Cow position: | chr20:10053000-10052811 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 130-336 |
| Cow position: | chr20:38515045-38514853 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 60, 19 |
| Conread position: | 130-336 |
| Cow position: | chr20:40158177-40157974 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 101, 47 |
| Conread position: | 130-339 |
| Cow position: | chr20:36634091-36633884 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 60, 31 |
| Conread position: | 130-350 |
| Cow position: | chr20:12995736-12995945 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 60, 79 |
| Conread position: | 130-350 |
| Cow position: | chr20:34097691-34097894 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 59, 107 |
| Conread position: | 131-262 |
| Cow position: | chr20:23846408-23846541 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 15, 106 |
| Conread position: | 131-345 |
| Cow position: | chr20:32627303-32627073 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 14, 173 |
| Conread position: | 132-226 |
| Cow position: | chr20:6054252-6054346 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 81 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 132-230 |
| Cow position: | chr20:3141830-3141732 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 84 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 45 |
| Conread position: | 132-250 |
| Cow position: | chr20:22030969-22030849 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 132-315 |
| Cow position: | chr20:9537423-9537227 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 132-328 |
| Cow position: | chr20:31311787-31311593 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 57, 97 |
| Conread position: | 132-342 |
| Cow position: | chr20:33820736-33820523 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 36, 79 |
| Conread position: | 132-343 |
| Cow position: | chr20:7709494-7709715 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 133-276 |
| Cow position: | chr20:16253710-16253568 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 13, 117 |
| Conread position: | 133-314 |
| Cow position: | chr20:36880752-36880931 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 121, 10 |
| Conread position: | 134-343 |
| Cow position: | chr20:15547472-15547256 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 18, 133 |
| Conread position: | 134-347 |
| Cow position: | chr20:17846254-17846022 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 134-355 |
| Cow position: | chr20:11043208-11043420 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 215, 9 |
| Conread position: | 135-347 |
| Cow position: | chr20:5827215-5827003 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 53, 120 |
| Conread position: | 136-350 |
| Cow position: | chr20:15589315-15589101 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 54, 22 |
| Conread position: | 137-330 |
| Cow position: | chr20:21715039-21714841 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 53, 75 |
| Conread position: | 137-347 |
| Cow position: | chr20:33438707-33438917 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 140-336 |
| Cow position: | chr20:30027621-30027422 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 158 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 140-381 |
| Cow position: | chr20:31931369-31931132 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 49, 112 |
| Conread position: | 141-296 |
| Cow position: | chr20:18659075-18659226 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 48, 107 |
| Conread position: | 141-347 |
| Cow position: | chr20:6890989-6890777 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 48, 144 |
| Conread position: | 142-269 |
| Cow position: | chr20:7331058-7330924 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 143-245 |
| Cow position: | chr20:2721778-2721675 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 143-258 |
| Cow position: | chr20:7291616-7291731 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 46, 65 |
| Conread position: | 143-264 |
| Cow position: | chr20:35447664-35447788 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 63 |
| Conread position: | 143-316 |
| Cow position: | chr20:3588904-3588733 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 47, 74 |
| Conread position: | 143-347 |
| Cow position: | chr20:580653-580857 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 48, 118 |
| Conread position: | 143-348 |
| Cow position: | chr20:37228823-37229021 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 47, 57 |
| Conread position: | 143-350 |
| Cow position: | chr20:8021381-8021186 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 47, 93 |
| Conread position: | 144-264 |
| Cow position: | chr20:5978600-5978720 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 44, 29 |
| Conread position: | 144-330 |
| Cow position: | chr20:5078879-5078707 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 69 |
| Conread position: | 145-336 |
| Cow position: | chr20:20242351-20242159 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 45, 66 |
| Conread position: | 145-347 |
| Cow position: | chr20:24902032-24902230 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 45, 90 |
| Conread position: | 145-355 |
| Cow position: | chr20:38578506-38578709 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 20 |
| Conread position: | 148-350 |
| Cow position: | chr20:20739035-20739227 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 42, 29 |
| Conread position: | 149-339 |
| Cow position: | chr20:26790362-26790540 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 41, 62 |
| Conread position: | 149-343 |
| Cow position: | chr20:3780939-3781139 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 42, 51 |
| Conread position: | 158-311 |
| Cow position: | chr20:39266707-39266859 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 158-340 |
| Cow position: | chr20:18392028-18392201 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 33, 51 |
| Conread position: | 158-350 |
| Cow position: | chr20:10772460-10772266 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 32, 162 |
| Conread position: | 172-350 |
| Cow position: | chr20:2169476-2169663 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 179-328 |
| Cow position: | chr20:23064606-23064753 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 11, 37 |
| Conread position: | 192-357 |
| Cow position: | chr20:27325152-27324990 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 142, 11 |
| Conread position: | 203-315 |
| Cow position: | chr20:5636688-5636576 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 42 |
| Conread position: | 205-348 |
| Cow position: | chr20:12334539-12334395 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 133, 55 |
| Conread position: | 206-347 |
| Cow position: | chr20:40692264-40692127 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 210-343 |
| Cow position: | chr20:26059031-26059164 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 128, 43 |
| Conread position: | 210-350 |
| Cow position: | chr20:24392380-24392242 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 225-346 |
| Cow position: | chr20:27340501-27340376 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 226-343 |
| Cow position: | chr20:35591464-35591582 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 226-347 |
| Cow position: | chr20:13617408-13617289 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 226-375 |
| Cow position: | chr20:15515257-15515410 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 112, 34 |
Show alignments to all cow chromosomes.