Cow genome map

Conread name: rsin35_c10.y1

Conread position: 96-239
Cow position: chr27:2685148-2685291 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 56, 15

Conread position: 97-336
Cow position: chr27:9697325-9697578 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 93, 24

Conread position: 101-336
Cow position: chr27:16590013-16589777 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 175
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 50, 151

Conread position: 104-343
Cow position: chr27:18923139-18922900 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 177
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 85, 20

Conread position: 106-237
Cow position: chr27:154149-154275 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 84, 28

Conread position: 111-233
Cow position: chr27:1193582-1193457 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 112-315
Cow position: chr27:26321397-26321607 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 78, 0

Conread position: 112-350
Cow position: chr27:29991738-29991508 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 167
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 23, 106

Conread position: 121-268
Cow position: chr27:1559179-1559030 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 121-337
Cow position: chr27:7448343-7448135 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 19, 0

Conread position: 122-336
Cow position: chr27:7212994-7212788 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 161
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 68, 20

Conread position: 125-353
Cow position: chr27:18752584-18752796 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 171
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 64, 85

Conread position: 126-224
Cow position: chr27:19074285-19074186 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 84
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 64, 0

Conread position: 128-347
Cow position: chr27:15343563-15343339 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 153
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 62, 32

Conread position: 129-240
Cow position: chr27:4411950-4411840 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 95
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 61, 92

Conread position: 129-252
Cow position: chr27:22547647-22547522 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 59, 0

Conread position: 129-358
Cow position: chr27:20275293-20275531 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 166
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 61, 12

Conread position: 130-226
Cow position: chr27:6751921-6752017 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 84
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 54, 11

Conread position: 130-226
Cow position: chr27:8292751-8292654 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 130-269
Cow position: chr27:22079428-22079288 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 114

Conread position: 130-270
Cow position: chr27:22708738-22708875 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 13, 116

Conread position: 130-315
Cow position: chr27:20485785-20485961 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 17, 80

Conread position: 130-331
Cow position: chr27:4720385-4720192 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 15, 48

Conread position: 130-334
Cow position: chr27:27270824-27270619 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 60, 18

Conread position: 130-334
Cow position: chr27:28945121-28944914 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 162
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 82, 19

Conread position: 130-336
Cow position: chr27:16088534-16088729 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 163
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 58, 11

Conread position: 130-343
Cow position: chr27:28467727-28467518 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 60, 105

Conread position: 130-350
Cow position: chr27:18826269-18826493 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 150
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 130-359
Cow position: chr27:18767341-18767115 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 157
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 21, 126

Conread position: 131-224
Cow position: chr27:15867136-15867230 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 131-245
Cow position: chr27:6428701-6428816 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 131-271
Cow position: chr27:5743110-5742968 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 59, 10

Conread position: 131-343
Cow position: chr27:28290585-28290795 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 166
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 59, 123

Conread position: 131-347
Cow position: chr27:19823051-19823278 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 172
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 15, 0

Conread position: 131-350
Cow position: chr27:815077-815302 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 59, 196

Conread position: 132-230
Cow position: chr27:28058179-28058281 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 132-264
Cow position: chr27:22181805-22181938 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 109
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 57, 0

Conread position: 132-315
Cow position: chr27:31170328-31170156 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 58, 101

Conread position: 132-342
Cow position: chr27:20336831-20337034 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 58, 47

Conread position: 132-350
Cow position: chr27:17919005-17918778 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 173
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 43, 0

Conread position: 132-350
Cow position: chr27:29658995-29658776 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 172

Conread position: 133-350
Cow position: chr27:536174-536400 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 160
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 56, 152

Conread position: 134-347
Cow position: chr27:27136794-27136584 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 16, 64

Conread position: 136-226
Cow position: chr27:23128213-23128304 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 80
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 137-237
Cow position: chr27:342375-342476 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 137-250
Cow position: chr27:23665040-23664927 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 58, 53

Conread position: 137-347
Cow position: chr27:20584719-20584520 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 159
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 14, 74

Conread position: 137-350
Cow position: chr27:26413529-26413315 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 53, 127

Conread position: 137-350
Cow position: chr27:28035125-28034912 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 154
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 53, 128

Conread position: 137-358
Cow position: chr27:11940495-11940280 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 161
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 52, 101

Conread position: 138-330
Cow position: chr27:20795523-20795712 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 52, 15

Conread position: 138-336
Cow position: chr27:30988524-30988722 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 153
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 51, 73

Conread position: 139-250
Cow position: chr27:30293171-30293059 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 51, 0

Conread position: 139-360
Cow position: chr27:6058042-6058247 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 166
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 117, 36

Conread position: 140-347
Cow position: chr27:22153591-22153795 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 50, 18

Conread position: 141-350
Cow position: chr27:27641283-27641073 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 157
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 42, 137

Conread position: 141-357
Cow position: chr27:28039098-28038898 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 165
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 49, 20

Conread position: 143-250
Cow position: chr27:11466761-11466653 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 47, 0

Conread position: 143-284
Cow position: chr27:17927400-17927262 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 47, 109

Conread position: 143-309
Cow position: chr27:30803938-30804100 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 47, 99

Conread position: 143-310
Cow position: chr27:23748810-23748641 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 18, 32

Conread position: 143-335
Cow position: chr27:15214949-15215154 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 156
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 49, 0

Conread position: 143-336
Cow position: chr27:6014926-6015127 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 143
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 47, 0

Conread position: 143-336
Cow position: chr27:23489120-23488935 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 145
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 48, 0

Conread position: 143-336
Cow position: chr27:27673303-27673090 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 162
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 47, 0

Conread position: 143-343
Cow position: chr27:27255722-27255921 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 47, 98

Conread position: 144-315
Cow position: chr27:13982303-13982465 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 46, 95

Conread position: 144-336
Cow position: chr27:237008-237194 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 136
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 46, 90

Conread position: 144-347
Cow position: chr27:22267975-22268165 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 148
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 13, 47

Conread position: 145-336
Cow position: chr27:27531881-27532063 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 142
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 45, 72

Conread position: 146-311
Cow position: chr27:13903171-13903016 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 43, 81

Conread position: 146-336
Cow position: chr27:19717656-19717840 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 154
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 44, 93

Conread position: 146-350
Cow position: chr27:23023728-23023943 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 149
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 44, 0

Conread position: 148-313
Cow position: chr27:5574017-5573850 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 42, 0

Conread position: 149-249
Cow position: chr27:25372655-25372554 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 149-281
Cow position: chr27:27709885-27709747 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 113
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 68, 0

Conread position: 149-343
Cow position: chr27:28541374-28541179 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 149
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 41, 68

Conread position: 149-353
Cow position: chr27:6952625-6952421 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 142
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 39, 175

Conread position: 152-347
Cow position: chr27:7731510-7731321 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 147
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 38, 95

Conread position: 155-336
Cow position: chr27:30489661-30489485 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 145
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 27, 82

Conread position: 158-343
Cow position: chr27:28245551-28245737 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 32, 89

Conread position: 161-336
Cow position: chr27:22455020-22454850 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 29, 55

Conread position: 174-347
Cow position: chr27:4386308-4386125 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 16, 8

Conread position: 179-350
Cow position: chr27:27614007-27614183 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 125
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 180-354
Cow position: chr27:8942922-8942745 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 12, 83

Conread position: 183-308
Cow position: chr27:22543594-22543721 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 9, 0

Conread position: 196-347
Cow position: chr27:22723908-22723757 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 208-343
Cow position: chr27:20543518-20543653 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 221-348
Cow position: chr27:15378664-15378538 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 35, 48

Conread position: 221-350
Cow position: chr27:17918499-17918374 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 223-347
Cow position: chr27:30359220-30359343 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 224-350
Cow position: chr27:31018011-31017886 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 93, 36

Conread position: 232-343
Cow position: chr27:23495886-23495777 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 241-350
Cow position: chr27:20812736-20812844 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 12, 0

Show alignments to all cow chromosomes.