Cow genome map

Conread name: rsin35_c10.y1

Conread position: 96-245
Cow position: chr29:35833012-35832858 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 125
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 43, 0

Conread position: 112-304
Cow position: chr29:8270719-8270513 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 119-315
Cow position: chr29:683233-683438 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 158
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 31, 172

Conread position: 123-347
Cow position: chr29:18579599-18579821 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 167
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 67, 127

Conread position: 124-343
Cow position: chr29:26631267-26631062 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 168
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 66, 25

Conread position: 127-336
Cow position: chr29:19742689-19742483 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 147
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 62, 49

Conread position: 128-236
Cow position: chr29:5210943-5210835 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 21, 9

Conread position: 129-218
Cow position: chr29:28420971-28420881 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 79
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 129-343
Cow position: chr29:35737102-35737306 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 165
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 18, 51

Conread position: 130-226
Cow position: chr29:28616933-28616836 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 82
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 130-230
Cow position: chr29:26777223-26777122 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 130-234
Cow position: chr29:26817790-26817687 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 88
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 60, 11

Conread position: 130-239
Cow position: chr29:2720842-2720952 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 95
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 59, 0

Conread position: 130-250
Cow position: chr29:32302026-32301905 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 100
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 61, 0

Conread position: 130-259
Cow position: chr29:29176153-29176283 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 110
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 58, 13

Conread position: 130-303
Cow position: chr29:2623263-2623444 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 143
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 8, 172

Conread position: 130-313
Cow position: chr29:35630198-35630377 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 54, 83

Conread position: 130-315
Cow position: chr29:17022396-17022200 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 153
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 16, 0

Conread position: 130-315
Cow position: chr29:36210364-36210190 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 16, 53

Conread position: 130-321
Cow position: chr29:28733897-28734089 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 149
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 59, 13

Conread position: 130-336
Cow position: chr29:28949199-28949003 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 156
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 19, 107

Conread position: 130-336
Cow position: chr29:35070856-35071055 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 14, 51

Conread position: 130-347
Cow position: chr29:24252481-24252252 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 161
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 15, 0

Conread position: 130-347
Cow position: chr29:25333229-25333441 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 60, 75

Conread position: 130-347
Cow position: chr29:32799491-32799693 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 165
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 60, 19

Conread position: 130-348
Cow position: chr29:16196068-16195858 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 60, 105

Conread position: 131-230
Cow position: chr29:4741177-4741277 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 85
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 131-256
Cow position: chr29:22705258-22705131 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 9, 109

Conread position: 131-331
Cow position: chr29:13373533-13373335 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 154
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 59, 120

Conread position: 131-336
Cow position: chr29:30188120-30188323 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 59, 12

Conread position: 131-347
Cow position: chr29:11527557-11527775 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 21, 133

Conread position: 131-350
Cow position: chr29:11647326-11647109 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 58, 82

Conread position: 131-350
Cow position: chr29:22518911-22519112 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 159
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 171, 11

Conread position: 132-233
Cow position: chr29:9800872-9800768 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 88
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 132-249
Cow position: chr29:10156052-10156173 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 132-294
Cow position: chr29:19586968-19587124 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 46, 0

Conread position: 132-336
Cow position: chr29:11562837-11562642 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 78, 0

Conread position: 132-350
Cow position: chr29:39329374-39329588 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 164
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 60, 11

Conread position: 133-315
Cow position: chr29:8768111-8767929 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 130
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 57, 81

Conread position: 133-350
Cow position: chr29:11397703-11397911 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 57, 84

Conread position: 133-350
Cow position: chr29:22175901-22175696 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 162
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 19, 45

Conread position: 133-355
Cow position: chr29:19061552-19061766 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 167
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 57, 35

Conread position: 135-298
Cow position: chr29:6271855-6271683 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 135-336
Cow position: chr29:27042262-27042074 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 42, 0

Conread position: 136-335
Cow position: chr29:8926243-8926431 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 54, 40

Conread position: 137-230
Cow position: chr29:13085858-13085764 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 137-231
Cow position: chr29:16059309-16059214 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 81
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 137-256
Cow position: chr29:35281677-35281560 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 52, 13

Conread position: 137-304
Cow position: chr29:34600646-34600806 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 53, 105

Conread position: 137-328
Cow position: chr29:16438566-16438742 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 52, 78

Conread position: 137-349
Cow position: chr29:8798806-8798999 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 160
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 53, 21

Conread position: 138-233
Cow position: chr29:11434317-11434222 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 81
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 138-301
Cow position: chr29:32766688-32766856 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 51, 162

Conread position: 139-331
Cow position: chr29:38605230-38605041 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 12, 41

Conread position: 139-354
Cow position: chr29:40994675-40994879 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 51, 75

Conread position: 141-222
Cow position: chr29:843807-843889 (view UCSC Genome Browser custom track)
Alignm length: 83
Alignm identity: 74
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 141-230
Cow position: chr29:36952110-36952200 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 78
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 141-325
Cow position: chr29:44378205-44378380 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 50, 82

Conread position: 141-336
Cow position: chr29:31200477-31200287 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 138
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 51, 109

Conread position: 141-347
Cow position: chr29:20177488-20177686 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 48, 74

Conread position: 142-344
Cow position: chr29:38581193-38581001 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 159
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 48, 83

Conread position: 142-350
Cow position: chr29:3590690-3590480 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 46, 16

Conread position: 143-230
Cow position: chr29:17297338-17297250 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 77
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 143-302
Cow position: chr29:18294573-18294407 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 143-311
Cow position: chr29:30366855-30367012 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 81, 0

Conread position: 143-339
Cow position: chr29:37990787-37990973 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 47, 93

Conread position: 143-348
Cow position: chr29:13028651-13028457 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 160
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 14, 74

Conread position: 143-350
Cow position: chr29:29940868-29940655 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 159
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 47, 0

Conread position: 143-350
Cow position: chr29:40298796-40299005 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 162
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 49, 0

Conread position: 144-332
Cow position: chr29:26672700-26672878 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 138
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 46, 70

Conread position: 144-339
Cow position: chr29:42771852-42771663 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 147
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 46, 91

Conread position: 144-340
Cow position: chr29:2730082-2730265 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 185, 46

Conread position: 144-347
Cow position: chr29:11042642-11042450 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 158
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 45, 33

Conread position: 144-347
Cow position: chr29:24026901-24026710 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 44, 61

Conread position: 145-250
Cow position: chr29:2523382-2523274 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 94
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 45, 0

Conread position: 145-303
Cow position: chr29:4602931-4603079 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 45, 88

Conread position: 145-314
Cow position: chr29:11705331-11705163 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 45, 103

Conread position: 145-315
Cow position: chr29:40097179-40097012 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 136
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 45, 86

Conread position: 145-320
Cow position: chr29:6033915-6034096 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 141
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 45, 0

Conread position: 145-350
Cow position: chr29:26764575-26764381 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 44, 23

Conread position: 146-331
Cow position: chr29:12783758-12783929 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 144
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 44, 65

Conread position: 147-350
Cow position: chr29:6844414-6844616 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 114

Conread position: 148-348
Cow position: chr29:34760206-34760400 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 149
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 40, 93

Conread position: 149-350
Cow position: chr29:16365658-16365870 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 159
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 41, 0

Conread position: 150-347
Cow position: chr29:22936478-22936288 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 39, 13

Conread position: 151-245
Cow position: chr29:11140061-11139967 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 83
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 39, 83

Conread position: 152-347
Cow position: chr29:2262790-2262978 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 38, 58

Conread position: 152-348
Cow position: chr29:28840364-28840174 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 34, 78

Conread position: 158-347
Cow position: chr29:13866994-13867192 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 33, 0

Conread position: 160-350
Cow position: chr29:33393871-33393693 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 148
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 31, 56

Conread position: 179-330
Cow position: chr29:2533466-2533318 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 122
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 11, 76

Conread position: 211-347
Cow position: chr29:1022450-1022314 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 41, 58

Conread position: 215-347
Cow position: chr29:26653893-26654026 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 23, 0

Conread position: 219-343
Cow position: chr29:6870621-6870743 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 223-336
Cow position: chr29:2522896-2522785 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 37, 0

Conread position: 225-340
Cow position: chr29:28775324-28775438 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 228-350
Cow position: chr29:629674-629553 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 32, 0

Show alignments to all cow chromosomes.