Cow genome map
| Conread name: | rski0110_o3.y1 |
| Conread position: | 101-233 |
| Cow position: | chr13:53858247-53858112 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 110-259 |
| Cow position: | chr13:58615011-58615164 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 112-274 |
| Cow position: | chr13:11463524-11463367 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 113-237 |
| Cow position: | chr13:40459991-40460118 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 114-232 |
| Cow position: | chr13:46501149-46501269 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 114-235 |
| Cow position: | chr13:26507762-26507886 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 114-235 |
| Cow position: | chr13:34689759-34689883 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 114-258 |
| Cow position: | chr13:62267397-62267249 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 114-269 |
| Cow position: | chr13:21628053-21627901 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 114-275 |
| Cow position: | chr13:661809-661654 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 114-275 |
| Cow position: | chr13:1958835-1958998 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 76, 143 |
| Conread position: | 114-275 |
| Cow position: | chr13:20156314-20156472 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 73, 128 |
| Conread position: | 114-280 |
| Cow position: | chr13:43156028-43155860 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 68, 147 |
| Conread position: | 114-281 |
| Cow position: | chr13:8822697-8822859 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 93, 34 |
| Conread position: | 114-282 |
| Cow position: | chr13:32167483-32167318 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 72, 60 |
| Conread position: | 114-283 |
| Cow position: | chr13:22075498-22075668 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 72, 122 |
| Conread position: | 114-283 |
| Cow position: | chr13:34995502-34995328 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 76, 154 |
| Conread position: | 114-288 |
| Cow position: | chr13:9664892-9665063 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 64, 27 |
| Conread position: | 114-288 |
| Cow position: | chr13:12521951-12521775 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 72, 143 |
| Conread position: | 114-288 |
| Cow position: | chr13:20466458-20466282 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 76, 154 |
| Conread position: | 114-289 |
| Cow position: | chr13:54094637-54094815 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 73, 148 |
| Conread position: | 114-293 |
| Cow position: | chr13:12233626-12233441 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 68, 151 |
| Conread position: | 114-294 |
| Cow position: | chr13:23265559-23265744 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 14, 155 |
| Conread position: | 114-294 |
| Cow position: | chr13:30271151-30271326 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 76, 49 |
| Conread position: | 114-301 |
| Cow position: | chr13:26523110-26522916 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 114-302 |
| Cow position: | chr13:58347913-58348114 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 76, 49 |
| Conread position: | 114-308 |
| Cow position: | chr13:22887162-22886957 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 114-308 |
| Cow position: | chr13:29820379-29820187 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 75, 147 |
| Conread position: | 114-308 |
| Cow position: | chr13:32718036-32717835 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 71, 146 |
| Conread position: | 114-308 |
| Cow position: | chr13:32904607-32904806 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 71, 29 |
| Conread position: | 115-283 |
| Cow position: | chr13:52748966-52748800 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 72, 127 |
| Conread position: | 115-298 |
| Cow position: | chr13:18761900-18761721 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 75, 104 |
| Conread position: | 120-242 |
| Cow position: | chr13:25057988-25058113 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 120-274 |
| Cow position: | chr13:17991492-17991644 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 66, 122 |
| Conread position: | 120-275 |
| Cow position: | chr13:10932389-10932541 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 120-275 |
| Cow position: | chr13:12745505-12745662 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 41, 123 |
| Conread position: | 120-275 |
| Cow position: | chr13:14717505-14717349 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 68, 38 |
| Conread position: | 120-275 |
| Cow position: | chr13:58621111-58620957 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 120-281 |
| Cow position: | chr13:18550838-18550997 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 62, 122 |
| Conread position: | 120-283 |
| Cow position: | chr13:6621758-6621593 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 35, 40 |
| Conread position: | 120-283 |
| Cow position: | chr13:52569170-52569004 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 64, 60 |
| Conread position: | 120-288 |
| Cow position: | chr13:54815078-54814910 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 66, 122 |
| Conread position: | 120-293 |
| Cow position: | chr13:20180249-20180422 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 64, 139 |
| Conread position: | 120-294 |
| Cow position: | chr13:34761518-34761688 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 165, 43 |
| Conread position: | 120-294 |
| Cow position: | chr13:43167198-43167021 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 63, 122 |
| Conread position: | 120-308 |
| Cow position: | chr13:35564148-35564337 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 66, 27 |
| Conread position: | 121-236 |
| Cow position: | chr13:13296222-13296108 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 122-245 |
| Cow position: | chr13:25206949-25207075 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 122-274 |
| Cow position: | chr13:47188274-47188426 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 70, 41 |
| Conread position: | 122-283 |
| Cow position: | chr13:7010308-7010466 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 64, 81 |
| Conread position: | 122-283 |
| Cow position: | chr13:9802904-9803062 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 64, 15 |
| Conread position: | 122-288 |
| Cow position: | chr13:17796201-17796371 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 27, 60 |
| Conread position: | 123-236 |
| Cow position: | chr13:9501750-9501635 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 123-259 |
| Cow position: | chr13:11834641-11834503 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 65, 21 |
| Conread position: | 123-273 |
| Cow position: | chr13:22082226-22082374 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 63, 119 |
| Conread position: | 123-283 |
| Cow position: | chr13:14099276-14099117 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 31, 120 |
| Conread position: | 123-283 |
| Cow position: | chr13:17346646-17346805 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 64, 118 |
| Conread position: | 123-284 |
| Cow position: | chr13:21120703-21120857 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 123-288 |
| Cow position: | chr13:49847762-49847926 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 62, 38 |
| Conread position: | 123-294 |
| Cow position: | chr13:32657213-32657393 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 141 |
| Conread position: | 123-307 |
| Cow position: | chr13:54865170-54864993 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 116, 40 |
| Conread position: | 125-272 |
| Cow position: | chr13:32773198-32773345 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 112, 21 |
| Conread position: | 125-308 |
| Cow position: | chr13:26508322-26508500 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 61, 112 |
| Conread position: | 128-288 |
| Cow position: | chr13:46284767-46284614 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 61, 108 |
| Conread position: | 129-240 |
| Cow position: | chr13:37435163-37435274 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 57, 84 |
| Conread position: | 129-283 |
| Cow position: | chr13:35719295-35719143 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 57, 101 |
| Conread position: | 129-288 |
| Cow position: | chr13:31852608-31852766 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 54, 62 |
| Conread position: | 129-293 |
| Cow position: | chr13:15091067-15090902 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 56, 84 |
| Conread position: | 130-237 |
| Cow position: | chr13:6927149-6927256 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 130-308 |
| Cow position: | chr13:24280100-24280286 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 28, 22 |
| Conread position: | 138-281 |
| Cow position: | chr13:46430452-46430312 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 51, 28 |
| Conread position: | 139-287 |
| Cow position: | chr13:54470869-54471012 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 141-283 |
| Cow position: | chr13:3016319-3016177 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 49, 116 |
| Conread position: | 144-283 |
| Cow position: | chr13:38898382-38898248 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 151-283 |
| Cow position: | chr13:54080950-54080816 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 110 |
Show alignments to all cow chromosomes.