Cow genome map
| Conread name: | rski0110_o3.y1 |
| Conread position: | 109-283 |
| Cow position: | chr17:20216370-20216195 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 76, 121 |
| Conread position: | 112-284 |
| Cow position: | chr17:36818236-36818066 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 113-281 |
| Cow position: | chr17:10221048-10220880 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 53, 146 |
| Conread position: | 114-231 |
| Cow position: | chr17:42775070-42775190 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 114-236 |
| Cow position: | chr17:11826259-11826384 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 114-275 |
| Cow position: | chr17:10769312-10769476 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 71, 66 |
| Conread position: | 114-275 |
| Cow position: | chr17:14278261-14278097 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 148 |
| Conread position: | 114-281 |
| Cow position: | chr17:33386619-33386448 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 74, 45 |
| Conread position: | 114-283 |
| Cow position: | chr17:143982-144148 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 72, 109 |
| Conread position: | 114-283 |
| Cow position: | chr17:27257020-27257200 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 74, 156 |
| Conread position: | 114-283 |
| Cow position: | chr17:34870278-34870107 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 74, 147 |
| Conread position: | 114-294 |
| Cow position: | chr17:36216988-36217166 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 114-298 |
| Cow position: | chr17:11655576-11655388 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 76, 182 |
| Conread position: | 114-302 |
| Cow position: | chr17:21730098-21730295 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 114-308 |
| Cow position: | chr17:18173633-18173833 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 114-308 |
| Cow position: | chr17:26614536-26614745 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 47, 14 |
| Conread position: | 114-308 |
| Cow position: | chr17:35212554-35212354 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 118-240 |
| Cow position: | chr17:27781260-27781135 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 119-248 |
| Cow position: | chr17:29270665-29270795 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 6, 45 |
| Conread position: | 119-290 |
| Cow position: | chr17:13229569-13229398 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 69, 140 |
| Conread position: | 120-281 |
| Cow position: | chr17:31798257-31798419 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 66, 90 |
| Conread position: | 120-282 |
| Cow position: | chr17:4085947-4085786 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 52, 43 |
| Conread position: | 120-283 |
| Cow position: | chr17:35387808-35387974 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 68, 142 |
| Conread position: | 120-288 |
| Cow position: | chr17:3042668-3042499 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 23, 47 |
| Conread position: | 120-292 |
| Cow position: | chr17:38139700-38139526 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 66, 21 |
| Conread position: | 120-297 |
| Cow position: | chr17:39012910-39012737 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 58 |
| Conread position: | 120-308 |
| Cow position: | chr17:8831951-8832138 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 66, 122 |
| Conread position: | 120-308 |
| Cow position: | chr17:30236385-30236197 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 154, 124 |
| Conread position: | 121-283 |
| Cow position: | chr17:1455750-1455909 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 7, 55 |
| Conread position: | 121-283 |
| Cow position: | chr17:9748935-9748774 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 43, 120 |
| Conread position: | 121-283 |
| Cow position: | chr17:11171979-11171820 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 51 |
| Conread position: | 121-285 |
| Cow position: | chr17:34627659-34627820 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 54, 118 |
| Conread position: | 121-288 |
| Cow position: | chr17:2271190-2271022 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 65, 42 |
| Conread position: | 122-240 |
| Cow position: | chr17:37043228-37043346 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 122-248 |
| Cow position: | chr17:8094036-8093908 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 68, 28 |
| Conread position: | 122-297 |
| Cow position: | chr17:27819486-27819308 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 64, 140 |
| Conread position: | 123-275 |
| Cow position: | chr17:8860967-8861110 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 123-288 |
| Cow position: | chr17:6569956-6570114 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 59 |
| Conread position: | 123-293 |
| Cow position: | chr17:36173776-36173955 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 40, 141 |
| Conread position: | 124-283 |
| Cow position: | chr17:23318133-23318289 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 65, 34 |
| Conread position: | 124-308 |
| Cow position: | chr17:7595338-7595153 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 62, 118 |
| Conread position: | 125-251 |
| Cow position: | chr17:23879339-23879468 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 125-283 |
| Cow position: | chr17:32457382-32457538 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 111 |
| Conread position: | 128-275 |
| Cow position: | chr17:3706454-3706601 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 128-293 |
| Cow position: | chr17:21373858-21373694 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 145, 110 |
| Conread position: | 129-307 |
| Cow position: | chr17:13715852-13716033 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 15 |
| Conread position: | 130-273 |
| Cow position: | chr17:1328780-1328633 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 56, 137 |
| Conread position: | 131-283 |
| Cow position: | chr17:8926036-8926186 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 59, 133 |
| Conread position: | 131-283 |
| Cow position: | chr17:10271672-10271523 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 55, 99 |
| Conread position: | 133-283 |
| Cow position: | chr17:37138937-37138790 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 144-281 |
| Cow position: | chr17:25180982-25181114 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 149-287 |
| Cow position: | chr17:34864731-34864598 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 90, 0 |
Show alignments to all cow chromosomes.