Cow genome map
| Conread name: | rski0110_o3.y1 |
| Conread position: | 101-283 |
| Cow position: | chr3:9630027-9629850 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 165, 109 |
| Conread position: | 109-270 |
| Cow position: | chr3:43653979-43654134 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 26, 80 |
| Conread position: | 110-288 |
| Cow position: | chr3:64536432-64536602 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 113-308 |
| Cow position: | chr3:20092391-20092591 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 72, 129 |
| Conread position: | 114-256 |
| Cow position: | chr3:84112445-84112593 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 114-272 |
| Cow position: | chr3:42480747-42480592 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 114-274 |
| Cow position: | chr3:34675856-34675694 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 72, 147 |
| Conread position: | 114-275 |
| Cow position: | chr3:74205675-74205834 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 74, 128 |
| Conread position: | 114-280 |
| Cow position: | chr3:11919905-11920066 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 114-280 |
| Cow position: | chr3:70354105-70354267 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 74, 121 |
| Conread position: | 114-283 |
| Cow position: | chr3:15221384-15221555 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 76, 147 |
| Conread position: | 114-286 |
| Cow position: | chr3:68342127-68342290 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 72, 50 |
| Conread position: | 114-288 |
| Cow position: | chr3:3736433-3736256 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 63, 148 |
| Conread position: | 114-288 |
| Cow position: | chr3:23091845-23092018 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 114-288 |
| Cow position: | chr3:25076033-25076209 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 76, 143 |
| Conread position: | 114-288 |
| Cow position: | chr3:41550242-41550417 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 69, 146 |
| Conread position: | 114-288 |
| Cow position: | chr3:77225245-77225076 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 114-293 |
| Cow position: | chr3:9074212-9074393 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 72, 147 |
| Conread position: | 114-293 |
| Cow position: | chr3:14505781-14505962 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 73, 147 |
| Conread position: | 114-293 |
| Cow position: | chr3:17633912-17634090 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 69, 30 |
| Conread position: | 114-293 |
| Cow position: | chr3:51492917-51492737 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 74, 61 |
| Conread position: | 114-293 |
| Cow position: | chr3:54340289-54340469 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 76, 49 |
| Conread position: | 114-296 |
| Cow position: | chr3:62884330-62884158 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 114-300 |
| Cow position: | chr3:65771203-65771387 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 150 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 166, 42 |
| Conread position: | 114-308 |
| Cow position: | chr3:58175033-58174829 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 126, 62 |
| Conread position: | 118-240 |
| Cow position: | chr3:74912983-74912858 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 118-248 |
| Cow position: | chr3:26740904-26741035 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 119-269 |
| Cow position: | chr3:8457783-8457631 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 5, 10 |
| Conread position: | 120-240 |
| Cow position: | chr3:25251032-25250908 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 120-246 |
| Cow position: | chr3:22171501-22171376 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 120-273 |
| Cow position: | chr3:39910932-39911082 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 70, 43 |
| Conread position: | 120-275 |
| Cow position: | chr3:24539000-24538847 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 66, 122 |
| Conread position: | 120-275 |
| Cow position: | chr3:58632689-58632537 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 66, 114 |
| Conread position: | 120-283 |
| Cow position: | chr3:10431727-10431567 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 66, 119 |
| Conread position: | 120-283 |
| Cow position: | chr3:55373441-55373603 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 66, 117 |
| Conread position: | 120-283 |
| Cow position: | chr3:61116725-61116891 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 70, 142 |
| Conread position: | 120-283 |
| Cow position: | chr3:61411248-61411090 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 70, 121 |
| Conread position: | 120-283 |
| Cow position: | chr3:68262890-68262726 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 66, 34 |
| Conread position: | 120-283 |
| Cow position: | chr3:74611691-74611530 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 68, 122 |
| Conread position: | 120-287 |
| Cow position: | chr3:8924168-8924005 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 68, 96 |
| Conread position: | 120-287 |
| Cow position: | chr3:26088869-26089042 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 65, 145 |
| Conread position: | 120-287 |
| Cow position: | chr3:36204680-36204504 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 120-297 |
| Cow position: | chr3:53588257-53588438 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 70, 48 |
| Conread position: | 120-308 |
| Cow position: | chr3:22271329-22271512 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 70, 24 |
| Conread position: | 121-271 |
| Cow position: | chr3:34085929-34086080 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 69, 139 |
| Conread position: | 121-287 |
| Cow position: | chr3:73436314-73436483 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 64, 140 |
| Conread position: | 121-306 |
| Cow position: | chr3:25091160-25090972 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 22, 46 |
| Conread position: | 122-226 |
| Cow position: | chr3:44643643-44643540 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 43 |
| Conread position: | 122-273 |
| Cow position: | chr3:24300486-24300333 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 57, 139 |
| Conread position: | 122-275 |
| Cow position: | chr3:5419738-5419889 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 68, 120 |
| Conread position: | 122-275 |
| Cow position: | chr3:15655020-15655176 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 68, 150 |
| Conread position: | 122-280 |
| Cow position: | chr3:42563569-42563422 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 134, 53 |
| Conread position: | 122-283 |
| Cow position: | chr3:6690376-6690218 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 120 |
| Conread position: | 122-283 |
| Cow position: | chr3:29507707-29507544 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 65, 139 |
| Conread position: | 122-308 |
| Cow position: | chr3:46094947-46094756 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 64, 88 |
| Conread position: | 123-242 |
| Cow position: | chr3:62628140-62628262 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 123-275 |
| Cow position: | chr3:41718516-41718367 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 63, 118 |
| Conread position: | 123-275 |
| Cow position: | chr3:66707945-66708096 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 25 |
| Conread position: | 123-283 |
| Cow position: | chr3:18214011-18214177 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 123-284 |
| Cow position: | chr3:891389-891230 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 63, 118 |
| Conread position: | 123-288 |
| Cow position: | chr3:5601042-5601209 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 123-288 |
| Cow position: | chr3:36100959-36100796 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 123-293 |
| Cow position: | chr3:55991744-55991912 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 63, 35 |
| Conread position: | 123-308 |
| Cow position: | chr3:23111388-23111582 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 63, 138 |
| Conread position: | 124-283 |
| Cow position: | chr3:8752910-8752750 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 67, 136 |
| Conread position: | 125-280 |
| Cow position: | chr3:61322963-61322810 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 63, 114 |
| Conread position: | 125-294 |
| Cow position: | chr3:53091605-53091442 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 65, 25 |
| Conread position: | 128-275 |
| Cow position: | chr3:77490689-77490549 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 128-281 |
| Cow position: | chr3:50281632-50281787 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 58, 125 |
| Conread position: | 128-294 |
| Cow position: | chr3:20471247-20471414 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 64, 18 |
| Conread position: | 129-288 |
| Cow position: | chr3:12255596-12255438 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 131-274 |
| Cow position: | chr3:31932983-31933124 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 58, 106 |
| Conread position: | 133-251 |
| Cow position: | chr3:8746118-8746238 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 54, 21 |
| Conread position: | 139-308 |
| Cow position: | chr3:1300324-1300153 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 96 |
| Conread position: | 145-274 |
| Cow position: | chr3:31750371-31750247 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 89, 0 |
Show alignments to all cow chromosomes.