Cow genome map
| Conread name: | rski0110_o3.y1 |
| Conread position: | 101-240 |
| Cow position: | chr4:62412015-62411874 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 85, 63 |
| Conread position: | 101-264 |
| Cow position: | chr4:21151758-21151600 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 148, 55 |
| Conread position: | 114-249 |
| Cow position: | chr4:19334732-19334869 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 114-258 |
| Cow position: | chr4:10836327-10836179 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 114-259 |
| Cow position: | chr4:20161332-20161480 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 72, 130 |
| Conread position: | 114-274 |
| Cow position: | chr4:45919183-45919026 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 78, 49 |
| Conread position: | 114-280 |
| Cow position: | chr4:22249300-22249463 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 78, 20 |
| Conread position: | 114-283 |
| Cow position: | chr4:10992051-10992218 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 70, 128 |
| Conread position: | 114-283 |
| Cow position: | chr4:44279786-44279957 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 73, 147 |
| Conread position: | 114-288 |
| Cow position: | chr4:5580708-5580532 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 76, 147 |
| Conread position: | 114-288 |
| Cow position: | chr4:10837232-10837406 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 75, 109 |
| Conread position: | 114-288 |
| Cow position: | chr4:20066072-20066244 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 75, 44 |
| Conread position: | 114-288 |
| Cow position: | chr4:21249877-21250058 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 76, 152 |
| Conread position: | 114-288 |
| Cow position: | chr4:37035085-37035261 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 73, 147 |
| Conread position: | 114-288 |
| Cow position: | chr4:38877917-38877736 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 74, 44 |
| Conread position: | 114-293 |
| Cow position: | chr4:21365552-21365378 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 76, 66 |
| Conread position: | 114-297 |
| Cow position: | chr4:9800152-9799971 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 72, 128 |
| Conread position: | 114-298 |
| Cow position: | chr4:22115755-22115573 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 46 |
| Conread position: | 114-308 |
| Cow position: | chr4:23311120-23311318 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 146, 69 |
| Conread position: | 114-308 |
| Cow position: | chr4:24433129-24432934 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 76, 143 |
| Conread position: | 114-308 |
| Cow position: | chr4:31172822-31172614 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 72, 94 |
| Conread position: | 114-308 |
| Cow position: | chr4:35471467-35471264 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 73, 49 |
| Conread position: | 115-287 |
| Cow position: | chr4:22528238-22528408 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 71, 127 |
| Conread position: | 115-308 |
| Cow position: | chr4:9548101-9547910 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 144, 151 |
| Conread position: | 118-288 |
| Cow position: | chr4:17304247-17304419 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 46, 115 |
| Conread position: | 119-288 |
| Cow position: | chr4:5002909-5002739 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 128 |
| Conread position: | 120-268 |
| Cow position: | chr4:51433554-51433404 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 66, 141 |
| Conread position: | 120-273 |
| Cow position: | chr4:52226147-52225994 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 63, 119 |
| Conread position: | 120-275 |
| Cow position: | chr4:36945050-36945205 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 68, 122 |
| Conread position: | 120-278 |
| Cow position: | chr4:29709616-29709782 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 147 |
| Conread position: | 120-284 |
| Cow position: | chr4:39767493-39767333 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 121 |
| Conread position: | 120-288 |
| Cow position: | chr4:25973042-25972874 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 69, 93 |
| Conread position: | 120-293 |
| Cow position: | chr4:19307397-19307230 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 120-296 |
| Cow position: | chr4:2121255-2121431 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 59, 124 |
| Conread position: | 120-296 |
| Cow position: | chr4:60031047-60030872 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 142 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 120-297 |
| Cow position: | chr4:30131479-30131296 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 67, 96 |
| Conread position: | 120-308 |
| Cow position: | chr4:26373533-26373720 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 72, 26 |
| Conread position: | 121-271 |
| Cow position: | chr4:17478160-17478304 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 48, 76 |
| Conread position: | 121-275 |
| Cow position: | chr4:65406231-65406378 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 121-288 |
| Cow position: | chr4:12697775-12697614 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 121-296 |
| Cow position: | chr4:20279470-20279292 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 69, 37 |
| Conread position: | 122-279 |
| Cow position: | chr4:37881075-37880918 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 64, 25 |
| Conread position: | 122-287 |
| Cow position: | chr4:40622960-40623123 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 37 |
| Conread position: | 123-287 |
| Cow position: | chr4:40433763-40433928 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 67, 26 |
| Conread position: | 123-288 |
| Cow position: | chr4:36813519-36813352 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 63, 133 |
| Conread position: | 123-289 |
| Cow position: | chr4:3267727-3267890 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 67, 35 |
| Conread position: | 123-308 |
| Cow position: | chr4:23758944-23758744 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 63, 130 |
| Conread position: | 124-275 |
| Cow position: | chr4:24415700-24415553 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 62, 118 |
| Conread position: | 124-281 |
| Cow position: | chr4:65604333-65604488 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 125-273 |
| Cow position: | chr4:44665234-44665383 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 65, 11 |
| Conread position: | 125-275 |
| Cow position: | chr4:5798105-5797953 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 61, 133 |
| Conread position: | 125-288 |
| Cow position: | chr4:50769626-50769793 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 60, 138 |
| Conread position: | 128-283 |
| Cow position: | chr4:1800041-1799889 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 61, 30 |
| Conread position: | 128-293 |
| Cow position: | chr4:54146331-54146493 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 58, 98 |
| Conread position: | 130-240 |
| Cow position: | chr4:59719736-59719626 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 133-293 |
| Cow position: | chr4:53752652-53752495 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 56, 18 |
| Conread position: | 133-308 |
| Cow position: | chr4:48499947-48499776 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 54, 96 |
| Conread position: | 136-285 |
| Cow position: | chr4:45952260-45952402 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 82, 0 |
Show alignments to all cow chromosomes.