Cow genome map
| Conread name: | rski0110_o3.y1 |
| Conread position: | 56-240 |
| Cow position: | chr5:17097949-17097766 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 121, 58 |
| Conread position: | 109-247 |
| Cow position: | chr5:34906258-34906122 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 60, 72 |
| Conread position: | 114-259 |
| Cow position: | chr5:67149834-67149978 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 76, 127 |
| Conread position: | 114-266 |
| Cow position: | chr5:70169526-70169669 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 114-267 |
| Cow position: | chr5:21356707-21356857 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 72, 30 |
| Conread position: | 114-268 |
| Cow position: | chr5:25681177-25681330 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 144, 73 |
| Conread position: | 114-270 |
| Cow position: | chr5:38936411-38936560 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 114-274 |
| Cow position: | chr5:50425304-50425462 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 76, 49 |
| Conread position: | 114-275 |
| Cow position: | chr5:18276661-18276502 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 114-275 |
| Cow position: | chr5:21194939-21195098 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 72, 130 |
| Conread position: | 114-275 |
| Cow position: | chr5:58320287-58320448 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 74, 141 |
| Conread position: | 114-280 |
| Cow position: | chr5:36487511-36487680 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 73, 145 |
| Conread position: | 114-280 |
| Cow position: | chr5:40234295-40234140 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 114-280 |
| Cow position: | chr5:58748951-58748786 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 76, 32 |
| Conread position: | 114-281 |
| Cow position: | chr5:1343673-1343836 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 72, 44 |
| Conread position: | 114-281 |
| Cow position: | chr5:28945876-28946045 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 80, 143 |
| Conread position: | 114-283 |
| Cow position: | chr5:27615696-27615530 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 72, 118 |
| Conread position: | 114-287 |
| Cow position: | chr5:39442480-39442305 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 75, 59 |
| Conread position: | 114-288 |
| Cow position: | chr5:15483219-15483039 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 32, 148 |
| Conread position: | 114-288 |
| Cow position: | chr5:41946031-41945858 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 76, 42 |
| Conread position: | 114-288 |
| Cow position: | chr5:57381729-57381544 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 92, 44 |
| Conread position: | 114-293 |
| Cow position: | chr5:58344042-58343861 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 72, 144 |
| Conread position: | 114-294 |
| Cow position: | chr5:39695835-39695653 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 72, 147 |
| Conread position: | 114-294 |
| Cow position: | chr5:41598528-41598710 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 72, 147 |
| Conread position: | 114-297 |
| Cow position: | chr5:45396229-45396414 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 73, 66 |
| Conread position: | 114-305 |
| Cow position: | chr5:42316731-42316919 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 72, 99 |
| Conread position: | 114-308 |
| Cow position: | chr5:47680833-47681034 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 18, 148 |
| Conread position: | 114-308 |
| Cow position: | chr5:56385397-56385202 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 120, 146 |
| Conread position: | 118-240 |
| Cow position: | chr5:3225800-3225921 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 120-272 |
| Cow position: | chr5:41604801-41604651 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 62, 122 |
| Conread position: | 120-275 |
| Cow position: | chr5:49655850-49656001 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 145, 119 |
| Conread position: | 120-283 |
| Cow position: | chr5:25919458-25919617 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 38 |
| Conread position: | 120-283 |
| Cow position: | chr5:40711269-40711423 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 120-283 |
| Cow position: | chr5:64399184-64399025 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 26 |
| Conread position: | 120-288 |
| Cow position: | chr5:15837717-15837882 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 65, 99 |
| Conread position: | 120-293 |
| Cow position: | chr5:30333128-30332957 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 66, 122 |
| Conread position: | 121-290 |
| Cow position: | chr5:54090214-54090041 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 43, 142 |
| Conread position: | 121-292 |
| Cow position: | chr5:75687149-75687326 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 69, 42 |
| Conread position: | 122-246 |
| Cow position: | chr5:33697373-33697500 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 122-283 |
| Cow position: | chr5:18554068-18553909 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 122-283 |
| Cow position: | chr5:41605636-41605806 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 122-283 |
| Cow position: | chr5:42782548-42782712 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 67, 140 |
| Conread position: | 122-288 |
| Cow position: | chr5:21530929-21531097 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 68, 140 |
| Conread position: | 122-293 |
| Cow position: | chr5:6987626-6987452 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 35, 24 |
| Conread position: | 122-294 |
| Cow position: | chr5:27411225-27411399 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 33, 37 |
| Conread position: | 122-308 |
| Cow position: | chr5:18695336-18695150 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 68, 135 |
| Conread position: | 123-255 |
| Cow position: | chr5:37272566-37272433 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 123-270 |
| Cow position: | chr5:3059094-3058949 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 59, 114 |
| Conread position: | 123-273 |
| Cow position: | chr5:17267717-17267869 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 66, 138 |
| Conread position: | 123-275 |
| Cow position: | chr5:36027973-36028124 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 67, 22 |
| Conread position: | 123-283 |
| Cow position: | chr5:41637039-41636884 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 123-283 |
| Cow position: | chr5:49567598-49567442 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 67, 40 |
| Conread position: | 123-283 |
| Cow position: | chr5:51503178-51503020 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 63, 114 |
| Conread position: | 123-288 |
| Cow position: | chr5:1349617-1349785 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 45, 139 |
| Conread position: | 123-288 |
| Cow position: | chr5:23366590-23366756 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 63, 142 |
| Conread position: | 123-288 |
| Cow position: | chr5:63328720-63328884 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 65, 23 |
| Conread position: | 123-297 |
| Cow position: | chr5:73556024-73556193 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 123-302 |
| Cow position: | chr5:3442620-3442442 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 67, 95 |
| Conread position: | 123-308 |
| Cow position: | chr5:23640842-23641020 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 61, 109 |
| Conread position: | 124-288 |
| Cow position: | chr5:59449399-59449563 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 115, 34 |
| Conread position: | 125-275 |
| Cow position: | chr5:27008065-27007920 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 125-283 |
| Cow position: | chr5:3649289-3649445 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 62, 111 |
| Conread position: | 128-291 |
| Cow position: | chr5:72363850-72364012 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 129-260 |
| Cow position: | chr5:41907198-41907068 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 59, 113 |
| Conread position: | 136-283 |
| Cow position: | chr5:34279445-34279590 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 50, 100 |
| Conread position: | 141-307 |
| Cow position: | chr5:73526523-73526352 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 101 |
| Conread position: | 147-297 |
| Cow position: | chr5:34184374-34184222 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 39, 114 |
Show alignments to all cow chromosomes.