Cow genome map
| Conread name: | rski0110_o3.y1 |
| Conread position: | 101-275 |
| Cow position: | chr6:43760564-43760400 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 101-283 |
| Cow position: | chr6:9026724-9026550 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 89, 27 |
| Conread position: | 112-283 |
| Cow position: | chr6:6994759-6994925 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 81, 109 |
| Conread position: | 113-269 |
| Cow position: | chr6:38594042-38594196 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 114-245 |
| Cow position: | chr6:37612303-37612169 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 114-268 |
| Cow position: | chr6:7707331-7707174 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 129 |
| Conread position: | 114-268 |
| Cow position: | chr6:28165022-28164866 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 72, 143 |
| Conread position: | 114-272 |
| Cow position: | chr6:53939161-53939001 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 76, 36 |
| Conread position: | 114-275 |
| Cow position: | chr6:47192328-47192490 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 76, 61 |
| Conread position: | 114-281 |
| Cow position: | chr6:2324027-2324193 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 73, 30 |
| Conread position: | 114-282 |
| Cow position: | chr6:38914638-38914470 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 74, 122 |
| Conread position: | 114-283 |
| Cow position: | chr6:4163973-4164140 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 45, 128 |
| Conread position: | 114-283 |
| Cow position: | chr6:54144500-54144333 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 72, 128 |
| Conread position: | 114-284 |
| Cow position: | chr6:6367476-6367641 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 72, 24 |
| Conread position: | 114-288 |
| Cow position: | chr6:24583034-24583200 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 73, 99 |
| Conread position: | 114-288 |
| Cow position: | chr6:34549592-34549423 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 114-294 |
| Cow position: | chr6:35774785-35774969 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 59, 148 |
| Conread position: | 114-297 |
| Cow position: | chr6:13718962-13718779 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 15, 145 |
| Conread position: | 114-306 |
| Cow position: | chr6:24650040-24649840 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 75, 30 |
| Conread position: | 115-285 |
| Cow position: | chr6:4023298-4023126 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 75, 156 |
| Conread position: | 115-297 |
| Cow position: | chr6:15782318-15782503 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 75, 142 |
| Conread position: | 119-282 |
| Cow position: | chr6:64427417-64427252 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 71, 142 |
| Conread position: | 119-283 |
| Cow position: | chr6:46676238-46676401 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 120-240 |
| Cow position: | chr6:17708090-17708206 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 120-260 |
| Cow position: | chr6:36892142-36892281 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 120-265 |
| Cow position: | chr6:29649297-29649150 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 70, 141 |
| Conread position: | 120-275 |
| Cow position: | chr6:827516-827669 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 66, 116 |
| Conread position: | 120-275 |
| Cow position: | chr6:1890386-1890543 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 126 |
| Conread position: | 120-275 |
| Cow position: | chr6:16733606-16733454 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 67, 90 |
| Conread position: | 120-275 |
| Cow position: | chr6:47858475-47858325 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 120-283 |
| Cow position: | chr6:510113-510276 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 68, 43 |
| Conread position: | 120-283 |
| Cow position: | chr6:53674053-53673890 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 70, 16 |
| Conread position: | 120-284 |
| Cow position: | chr6:10237525-10237363 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 66, 122 |
| Conread position: | 120-293 |
| Cow position: | chr6:24545805-24545630 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 72, 138 |
| Conread position: | 120-296 |
| Cow position: | chr6:51294477-51294299 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 63, 142 |
| Conread position: | 120-308 |
| Cow position: | chr6:20255215-20255413 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 70, 142 |
| Conread position: | 120-308 |
| Cow position: | chr6:38453590-38453787 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 69, 125 |
| Conread position: | 121-275 |
| Cow position: | chr6:48572689-48572846 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 65, 134 |
| Conread position: | 121-283 |
| Cow position: | chr6:24558068-24557911 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 38 |
| Conread position: | 121-283 |
| Cow position: | chr6:56376159-56376322 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 35 |
| Conread position: | 121-288 |
| Cow position: | chr6:3078691-3078536 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 121-297 |
| Cow position: | chr6:32798682-32798855 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 65, 123 |
| Conread position: | 122-275 |
| Cow position: | chr6:50034540-50034692 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 122-283 |
| Cow position: | chr6:19427640-19427483 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 65, 120 |
| Conread position: | 122-308 |
| Cow position: | chr6:48806819-48807009 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 123-259 |
| Cow position: | chr6:15754031-15753893 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 66, 40 |
| Conread position: | 123-283 |
| Cow position: | chr6:15997030-15997187 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 65, 35 |
| Conread position: | 123-283 |
| Cow position: | chr6:53264611-53264779 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 123-293 |
| Cow position: | chr6:6943493-6943663 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 67, 45 |
| Conread position: | 123-293 |
| Cow position: | chr6:59588220-59588387 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 46 |
| Conread position: | 123-293 |
| Cow position: | chr6:65872077-65871906 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 56, 85 |
| Conread position: | 123-308 |
| Cow position: | chr6:29412600-29412783 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 65, 113 |
| Conread position: | 124-280 |
| Cow position: | chr6:36194782-36194628 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 74, 39 |
| Conread position: | 125-281 |
| Cow position: | chr6:18469047-18469197 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 125-281 |
| Cow position: | chr6:18582629-18582779 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 125-281 |
| Cow position: | chr6:30160504-30160353 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 61, 33 |
| Conread position: | 125-288 |
| Cow position: | chr6:24622790-24622952 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 65, 23 |
| Conread position: | 125-292 |
| Cow position: | chr6:7498281-7498443 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 128-259 |
| Cow position: | chr6:59496402-59496269 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 58, 82 |
| Conread position: | 128-275 |
| Cow position: | chr6:40468-40616 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 62, 44 |
| Conread position: | 128-294 |
| Cow position: | chr6:54478967-54479137 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 133 |
| Conread position: | 128-297 |
| Cow position: | chr6:60503561-60503390 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 145, 130 |
| Conread position: | 129-271 |
| Cow position: | chr6:7173571-7173711 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 133-288 |
| Cow position: | chr6:32277124-32276967 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 53, 128 |
| Conread position: | 137-283 |
| Cow position: | chr6:35415353-35415489 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 146-293 |
| Cow position: | chr6:2583025-2582876 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 115 |
Show alignments to all cow chromosomes.