Cow genome map
| Conread name: | rski0110_o3.y1 |
| Conread position: | 110-275 |
| Cow position: | chrX:36841049-36840888 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 76, 17 |
| Conread position: | 112-294 |
| Cow position: | chrX:630121-630307 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 13, 151 |
| Conread position: | 113-283 |
| Cow position: | chrX:8918019-8917860 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 114-242 |
| Cow position: | chrX:8103108-8103235 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 76, 14 |
| Conread position: | 114-252 |
| Cow position: | chrX:37186344-37186206 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 76, 90 |
| Conread position: | 114-282 |
| Cow position: | chrX:42011466-42011295 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 72, 145 |
| Conread position: | 114-283 |
| Cow position: | chrX:33802823-33802990 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 74, 128 |
| Conread position: | 114-284 |
| Cow position: | chrX:28930020-28929855 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 114-286 |
| Cow position: | chrX:12304745-12304571 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 76, 30 |
| Conread position: | 114-286 |
| Cow position: | chrX:15329827-15329653 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 39, 45 |
| Conread position: | 114-287 |
| Cow position: | chrX:23414191-23414360 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 171, 74 |
| Conread position: | 114-288 |
| Cow position: | chrX:16514090-16514253 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 114-288 |
| Cow position: | chrX:29874187-29874362 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 74, 66 |
| Conread position: | 114-294 |
| Cow position: | chrX:6203726-6203541 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 74, 145 |
| Conread position: | 114-294 |
| Cow position: | chrX:23179097-23179277 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 16, 39 |
| Conread position: | 114-294 |
| Cow position: | chrX:25713980-25713798 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 72, 147 |
| Conread position: | 115-273 |
| Cow position: | chrX:159575-159732 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 33, 123 |
| Conread position: | 115-288 |
| Cow position: | chrX:20377147-20376979 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 119-242 |
| Cow position: | chrX:22285058-22284936 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 83, 61 |
| Conread position: | 119-283 |
| Cow position: | chrX:17630621-17630790 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 70, 149 |
| Conread position: | 119-288 |
| Cow position: | chrX:31602837-31602666 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 61, 138 |
| Conread position: | 120-240 |
| Cow position: | chrX:46028583-46028706 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 120-259 |
| Cow position: | chrX:16291842-16291983 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 120-275 |
| Cow position: | chrX:6674736-6674898 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 68, 146 |
| Conread position: | 120-282 |
| Cow position: | chrX:7425644-7425484 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 66, 122 |
| Conread position: | 120-283 |
| Cow position: | chrX:18456579-18456419 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 70, 120 |
| Conread position: | 120-283 |
| Cow position: | chrX:46084151-46083984 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 65, 143 |
| Conread position: | 120-283 |
| Cow position: | chrX:47744266-47744105 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 66, 128 |
| Conread position: | 120-288 |
| Cow position: | chrX:29407845-29408014 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 69, 8 |
| Conread position: | 120-293 |
| Cow position: | chrX:27771399-27771569 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 115 |
| Conread position: | 120-298 |
| Cow position: | chrX:39126505-39126324 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 68, 138 |
| Conread position: | 120-307 |
| Cow position: | chrX:5046738-5046923 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 69, 122 |
| Conread position: | 121-280 |
| Cow position: | chrX:25338365-25338204 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 65, 140 |
| Conread position: | 121-288 |
| Cow position: | chrX:39415191-39415362 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 142 |
| Conread position: | 121-296 |
| Cow position: | chrX:36009735-36009912 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 68, 140 |
| Conread position: | 122-266 |
| Cow position: | chrX:3951217-3951071 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 64, 130 |
| Conread position: | 122-271 |
| Cow position: | chrX:19678098-19678242 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 122-281 |
| Cow position: | chrX:27287560-27287717 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 59 |
| Conread position: | 122-281 |
| Cow position: | chrX:39338927-39339092 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 122-283 |
| Cow position: | chrX:15049664-15049508 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 122-283 |
| Cow position: | chrX:17964344-17964509 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 44, 138 |
| Conread position: | 122-283 |
| Cow position: | chrX:29761507-29761671 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 68, 140 |
| Conread position: | 122-297 |
| Cow position: | chrX:18142278-18142457 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 68, 36 |
| Conread position: | 123-245 |
| Cow position: | chrX:488853-488729 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 123-245 |
| Cow position: | chrX:17895758-17895878 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 123-248 |
| Cow position: | chrX:18417129-18417257 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 123-258 |
| Cow position: | chrX:10289452-10289589 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 67, 40 |
| Conread position: | 123-275 |
| Cow position: | chrX:7497414-7497264 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 24, 36 |
| Conread position: | 123-282 |
| Cow position: | chrX:6563695-6563538 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 63, 113 |
| Conread position: | 123-283 |
| Cow position: | chrX:24259406-24259568 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 82, 135 |
| Conread position: | 123-283 |
| Cow position: | chrX:39000026-38999869 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 20, 112 |
| Conread position: | 123-288 |
| Cow position: | chrX:9839399-9839237 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 67, 40 |
| Conread position: | 123-308 |
| Cow position: | chrX:17042858-17042666 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 67, 138 |
| Conread position: | 123-308 |
| Cow position: | chrX:34470888-34470706 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 67, 35 |
| Conread position: | 125-273 |
| Cow position: | chrX:28787518-28787376 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 125-283 |
| Cow position: | chrX:10302515-10302353 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 138 |
| Conread position: | 125-283 |
| Cow position: | chrX:21664547-21664706 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 61, 127 |
| Conread position: | 125-283 |
| Cow position: | chrX:27176140-27176299 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 65, 38 |
| Conread position: | 128-280 |
| Cow position: | chrX:48089233-48089388 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 30, 130 |
| Conread position: | 128-281 |
| Cow position: | chrX:31340881-31340726 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 31 |
| Conread position: | 128-283 |
| Cow position: | chrX:16419317-16419164 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 62, 109 |
| Conread position: | 128-293 |
| Cow position: | chrX:15305125-15305296 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 62, 147 |
| Conread position: | 129-271 |
| Cow position: | chrX:43980906-43980765 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 18, 117 |
| Conread position: | 129-288 |
| Cow position: | chrX:25388076-25388229 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 129-297 |
| Cow position: | chrX:2301094-2300921 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 61, 129 |
| Conread position: | 129-308 |
| Cow position: | chrX:41084086-41083899 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 28, 134 |
| Conread position: | 133-251 |
| Cow position: | chrX:24747020-24747138 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 53, 77 |
| Conread position: | 133-253 |
| Cow position: | chrX:22326285-22326162 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 134-285 |
| Cow position: | chrX:30979971-30980124 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 127 |
| Conread position: | 146-283 |
| Cow position: | chrX:32743685-32743551 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 159-274 |
| Cow position: | chrX:18286937-18287054 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 31, 102 |
Show alignments to all cow chromosomes.