Cow genome map
| Conread name: | rski0136_c11.y1 |
| Conread position: | 368-530 |
| Cow position: | chr3:58767133-58767299 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 371-571 |
| Cow position: | chr3:61278782-61278999 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 14, 71 |
| Conread position: | 374-620 |
| Cow position: | chr3:58527269-58527519 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 23, 9 |
| Conread position: | 377-539 |
| Cow position: | chr3:27545943-27545774 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 60, 91 |
| Conread position: | 382-529 |
| Cow position: | chr3:57624343-57624499 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 383-530 |
| Cow position: | chr3:74878709-74878553 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 383-539 |
| Cow position: | chr3:78896529-78896692 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 383-541 |
| Cow position: | chr3:35153500-35153664 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 383-582 |
| Cow position: | chr3:79292710-79292929 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 13, 135 |
| Conread position: | 383-585 |
| Cow position: | chr3:17235329-17235112 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 383-609 |
| Cow position: | chr3:28908322-28908085 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 16, 216 |
| Conread position: | 383-616 |
| Cow position: | chr3:14598831-14599067 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 20, 182 |
| Conread position: | 383-619 |
| Cow position: | chr3:2506596-2506335 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 383-620 |
| Cow position: | chr3:65058583-65058840 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 16, 106 |
| Conread position: | 383-620 |
| Cow position: | chr3:70334815-70334550 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 386-530 |
| Cow position: | chr3:48810755-48810609 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 21, 40 |
| Conread position: | 386-620 |
| Cow position: | chr3:73395006-73395257 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 13, 98 |
| Conread position: | 388-529 |
| Cow position: | chr3:52863296-52863149 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 388-529 |
| Cow position: | chr3:67930295-67930151 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 122 |
| Conread position: | 388-530 |
| Cow position: | chr3:80053651-80053506 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 18, 126 |
| Conread position: | 388-539 |
| Cow position: | chr3:59621757-59621603 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 388-619 |
| Cow position: | chr3:70334076-70333828 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 388-620 |
| Cow position: | chr3:5374222-5374453 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 60, 116 |
| Conread position: | 388-620 |
| Cow position: | chr3:44101859-44102109 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 20, 179 |
| Conread position: | 388-620 |
| Cow position: | chr3:71231286-71231540 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 20, 130 |
| Conread position: | 389-530 |
| Cow position: | chr3:17935048-17934902 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 27 |
| Conread position: | 389-606 |
| Cow position: | chr3:28898335-28898091 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 389-619 |
| Cow position: | chr3:5365564-5365806 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 389-619 |
| Cow position: | chr3:53046770-53046517 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 52, 19 |
| Conread position: | 389-620 |
| Cow position: | chr3:3649331-3649097 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 87 |
| Conread position: | 389-620 |
| Cow position: | chr3:18725749-18725520 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 183, 156 |
| Conread position: | 390-620 |
| Cow position: | chr3:58765187-58764944 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 391-620 |
| Cow position: | chr3:3656404-3656660 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 392-530 |
| Cow position: | chr3:24935264-24935401 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 58, 36 |
| Conread position: | 392-620 |
| Cow position: | chr3:15443836-15443584 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 50, 103 |
| Conread position: | 393-618 |
| Cow position: | chr3:76172771-76172542 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 15, 43 |
| Conread position: | 394-539 |
| Cow position: | chr3:12712024-12711870 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 394-571 |
| Cow position: | chr3:63179756-63179933 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 14, 32 |
| Conread position: | 395-530 |
| Cow position: | chr3:74900741-74900604 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 55, 16 |
| Conread position: | 403-616 |
| Cow position: | chr3:54960093-54960304 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 37, 88 |
| Conread position: | 403-620 |
| Cow position: | chr3:64281027-64280796 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 403-620 |
| Cow position: | chr3:65413375-65413132 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 404-530 |
| Cow position: | chr3:81277565-81277432 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 404-620 |
| Cow position: | chr3:23804422-23804647 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 43, 100 |
| Conread position: | 406-571 |
| Cow position: | chr3:46006107-46005931 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 407-620 |
| Cow position: | chr3:34871474-34871710 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 37, 9 |
| Conread position: | 409-525 |
| Cow position: | chr3:70401812-70401927 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 24, 41 |
| Conread position: | 409-530 |
| Cow position: | chr3:5097117-5097243 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 409-530 |
| Cow position: | chr3:54100810-54100690 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 409-538 |
| Cow position: | chr3:59884161-59884025 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 409-543 |
| Cow position: | chr3:4319622-4319760 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 409-577 |
| Cow position: | chr3:46901108-46901295 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 409-619 |
| Cow position: | chr3:76268068-76267833 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 409-620 |
| Cow position: | chr3:51234185-51233962 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 25, 86 |
| Conread position: | 409-620 |
| Cow position: | chr3:81087722-81087494 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 410-530 |
| Cow position: | chr3:53704055-53703927 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 410-539 |
| Cow position: | chr3:20437740-20437611 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 31, 40 |
| Conread position: | 410-539 |
| Cow position: | chr3:59474031-59474167 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 410-550 |
| Cow position: | chr3:80468764-80468618 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 411-530 |
| Cow position: | chr3:65019953-65019829 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 411-620 |
| Cow position: | chr3:75238370-75238602 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 419-620 |
| Cow position: | chr3:27976606-27976380 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 151 |
| Conread position: | 432-530 |
| Cow position: | chr3:11292310-11292212 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 84 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.