Cow genome map
| Conread name: | rski0136_c11.y1 |
| Conread position: | 326-569 |
| Cow position: | chr4:47510229-47510490 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 367-585 |
| Cow position: | chr4:22345138-22344911 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 75, 150 |
| Conread position: | 373-550 |
| Cow position: | chr4:16762842-16762649 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 24, 7 |
| Conread position: | 377-530 |
| Cow position: | chr4:45563634-45563795 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 22, 93 |
| Conread position: | 380-620 |
| Cow position: | chr4:8770002-8770252 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 28, 189 |
| Conread position: | 382-530 |
| Cow position: | chr4:21371286-21371444 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 383-530 |
| Cow position: | chr4:20815-20965 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 20, 63 |
| Conread position: | 383-541 |
| Cow position: | chr4:13941359-13941520 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 124 |
| Conread position: | 383-608 |
| Cow position: | chr4:46456164-46455919 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 383-615 |
| Cow position: | chr4:22546942-22546690 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 14, 225 |
| Conread position: | 383-619 |
| Cow position: | chr4:45685367-45685610 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 149, 27 |
| Conread position: | 383-620 |
| Cow position: | chr4:49794568-49794808 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 14, 34 |
| Conread position: | 384-550 |
| Cow position: | chr4:19501191-19501015 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 386-530 |
| Cow position: | chr4:26400862-26401008 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 17, 92 |
| Conread position: | 388-511 |
| Cow position: | chr4:2537098-2537226 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 388-530 |
| Cow position: | chr4:18107254-18107107 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 108 |
| Conread position: | 388-617 |
| Cow position: | chr4:29291423-29291661 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 20, 102 |
| Conread position: | 388-620 |
| Cow position: | chr4:22101357-22101103 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 389-524 |
| Cow position: | chr4:27755392-27755257 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 68, 14 |
| Conread position: | 389-525 |
| Cow position: | chr4:65950560-65950703 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 389-530 |
| Cow position: | chr4:31004504-31004356 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 391-620 |
| Cow position: | chr4:12473757-12474009 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 391-620 |
| Cow position: | chr4:13284291-13284542 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 391-620 |
| Cow position: | chr4:45775430-45775172 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 403-619 |
| Cow position: | chr4:19292641-19292870 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 403-620 |
| Cow position: | chr4:41899902-41900126 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 120, 28 |
| Conread position: | 403-620 |
| Cow position: | chr4:56570728-56570949 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 133 |
| Conread position: | 404-620 |
| Cow position: | chr4:62370238-62370467 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 38, 197 |
| Conread position: | 409-530 |
| Cow position: | chr4:19430287-19430418 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 409-530 |
| Cow position: | chr4:51729879-51730003 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 409-530 |
| Cow position: | chr4:64040047-64040168 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 73 |
| Conread position: | 409-530 |
| Cow position: | chr4:65175216-65175092 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 409-539 |
| Cow position: | chr4:3850479-3850613 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 409-571 |
| Cow position: | chr4:41185982-41185812 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 34, 7 |
| Conread position: | 409-615 |
| Cow position: | chr4:45626696-45626479 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 33, 180 |
| Conread position: | 409-616 |
| Cow position: | chr4:53126043-53126260 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 33, 178 |
| Conread position: | 409-620 |
| Cow position: | chr4:508981-508749 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 409-620 |
| Cow position: | chr4:19102958-19102718 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 31, 65 |
| Conread position: | 409-620 |
| Cow position: | chr4:19313938-19314150 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 140 |
| Conread position: | 409-620 |
| Cow position: | chr4:34369525-34369307 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 37, 135 |
| Conread position: | 409-620 |
| Cow position: | chr4:52779779-52780004 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 38, 188 |
| Conread position: | 409-620 |
| Cow position: | chr4:56239928-56239703 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 113, 193 |
| Conread position: | 410-530 |
| Cow position: | chr4:61313281-61313160 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 410-539 |
| Cow position: | chr4:65650201-65650072 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 74 |
| Conread position: | 410-571 |
| Cow position: | chr4:20142980-20142804 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 32, 133 |
| Conread position: | 411-529 |
| Cow position: | chr4:46591594-46591719 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 411-530 |
| Cow position: | chr4:65432078-65432203 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 31, 6 |
| Conread position: | 412-618 |
| Cow position: | chr4:32693714-32693944 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 412-620 |
| Cow position: | chr4:23445119-23444880 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 431-618 |
| Cow position: | chr4:37343080-37343276 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 165 |
| Conread position: | 449-606 |
| Cow position: | chr4:43763056-43763211 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 38, 19 |
| Conread position: | 449-620 |
| Cow position: | chr4:50687889-50687707 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 83, 0 |
Show alignments to all cow chromosomes.