Cow genome map

Conread name: rspc008_n3.y1

Conread position: 11-392
Cow position: chr11:62787657-62788040 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 10

Conread position: 16-210
Cow position: chr11:53429024-53428828 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 74, 114

Conread position: 17-384
Cow position: chr11:76767416-76767782 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 43

Conread position: 20-380
Cow position: chr11:75711251-75710885 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 201

Conread position: 21-385
Cow position: chr11:43997092-43996721 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 256
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 21, 38

Conread position: 22-387
Cow position: chr11:49037409-49037042 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 34

Conread position: 23-223
Cow position: chr11:47845771-47845975 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 141
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 67, 0

Conread position: 23-229
Cow position: chr11:32875938-32875728 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 67, 0

Conread position: 23-258
Cow position: chr11:24493803-24493562 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 166
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 67, 198

Conread position: 23-310
Cow position: chr11:38832474-38832181 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 209
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 66, 0

Conread position: 23-310
Cow position: chr11:61131948-61131655 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 207
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 67, 227

Conread position: 23-312
Cow position: chr11:24045755-24045461 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 205
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 67, 239

Conread position: 23-328
Cow position: chr11:19061069-19060757 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 219
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 67, 227

Conread position: 23-351
Cow position: chr11:57625185-57624848 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 23-367
Cow position: chr11:25759748-25760097 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 112

Conread position: 23-367
Cow position: chr11:50282405-50282055 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 198

Conread position: 23-378
Cow position: chr11:15047464-15047823 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-379
Cow position: chr11:17104697-17104339 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 133

Conread position: 23-379
Cow position: chr11:30164577-30164917 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 242
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 64, 179

Conread position: 23-380
Cow position: chr11:2294055-2293692 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr11:2801254-2800892 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr11:4596572-4596935 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr11:4734288-4734651 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr11:6343464-6343827 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr11:8366565-8366928 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr11:10100053-10100416 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr11:10698741-10698378 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr11:10871820-10871457 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr11:11315824-11315461 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr11:15495393-15495756 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr11:17549163-17549526 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr11:17854099-17854462 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr11:20285613-20285250 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr11:23904287-23904646 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 223

Conread position: 23-380
Cow position: chr11:24333988-24333625 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr11:24397393-24397030 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr11:27724896-27724533 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 23-380
Cow position: chr11:28125520-28125881 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 225

Conread position: 23-380
Cow position: chr11:30087881-30088244 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr11:30255442-30255806 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 228

Conread position: 23-380
Cow position: chr11:30776968-30777331 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr11:30929387-30929750 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr11:31834256-31833893 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr11:34638499-34638136 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr11:35142327-35141968 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 226

Conread position: 23-380
Cow position: chr11:35542063-35541709 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 251
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 67, 31

Conread position: 23-380
Cow position: chr11:38505226-38504863 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr11:38599709-38599346 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr11:41260923-41260561 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr11:41314301-41314663 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 14

Conread position: 23-380
Cow position: chr11:46142981-46142621 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr11:47573531-47573168 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr11:47972847-47972500 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 241
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 67, 215

Conread position: 23-380
Cow position: chr11:51034281-51034644 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr11:52846480-52846843 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr11:54302542-54302905 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr11:56916717-56916355 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 45

Conread position: 23-380
Cow position: chr11:58136722-58137079 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr11:61397616-61397253 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr11:63860638-63860276 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 49

Conread position: 23-380
Cow position: chr11:65760601-65760239 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 45

Conread position: 23-380
Cow position: chr11:66664414-66664052 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 92

Conread position: 23-380
Cow position: chr11:67453660-67454021 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 84

Conread position: 23-380
Cow position: chr11:67920333-67919974 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 70

Conread position: 23-380
Cow position: chr11:73137597-73137946 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 249
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 67, 31

Conread position: 23-380
Cow position: chr11:75256195-75256558 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr11:84967113-84967476 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-382
Cow position: chr11:63390477-63390112 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-385
Cow position: chr11:33189576-33189944 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-385
Cow position: chr11:62791900-62792267 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 246
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 67, 112

Conread position: 23-387
Cow position: chr11:8443983-8443616 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 87

Conread position: 23-388
Cow position: chr11:2285718-2286089 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 227

Conread position: 23-388
Cow position: chr11:22617941-22617570 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-389
Cow position: chr11:3238306-3238680 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 228

Conread position: 23-391
Cow position: chr11:32455059-32455434 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 24-380
Cow position: chr11:38574479-38574117 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 226

Conread position: 27-380
Cow position: chr11:54303912-54304271 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 194

Conread position: 27-384
Cow position: chr11:3263832-3264196 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 224

Conread position: 27-387
Cow position: chr11:69403214-69402848 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 227

Conread position: 31-380
Cow position: chr11:7120950-7120582 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 261
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 59, 204

Conread position: 33-380
Cow position: chr11:70978376-70978024 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 25

Conread position: 41-380
Cow position: chr11:40139547-40139208 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 14

Conread position: 54-361
Cow position: chr11:31802683-31802370 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 167

Conread position: 65-349
Cow position: chr11:4060906-4060613 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 209
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 27, 187

Conread position: 65-380
Cow position: chr11:10043291-10043612 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 185

Conread position: 72-380
Cow position: chr11:44356833-44356520 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 223
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 18, 178

Conread position: 78-380
Cow position: chr11:72050042-72050348 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 210
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 151, 15

Conread position: 79-380
Cow position: chr11:1268444-1268137 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 212
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 11, 173

Conread position: 83-417
Cow position: chr11:82145656-82145331 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 237
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 19, 95

Conread position: 89-379
Cow position: chr11:65670415-65670709 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 201
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 118, 158

Conread position: 89-380
Cow position: chr11:2350593-2350887 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 203
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 140, 158

Conread position: 89-380
Cow position: chr11:25524919-25525213 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 193

Conread position: 92-380
Cow position: chr11:2421544-2421835 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 203
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 137, 155

Conread position: 98-521
Cow position: chr11:48980246-48979818 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 200
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 15, 122

Conread position: 99-380
Cow position: chr11:36167674-36167390 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 199
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 130, 148

Conread position: 100-380
Cow position: chr11:57595006-57594723 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 200
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 107, 118

Conread position: 110-380
Cow position: chr11:61431642-61431369 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 188
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 119, 137

Conread position: 115-380
Cow position: chr11:20428362-20428630 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 194
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 92, 103

Conread position: 115-380
Cow position: chr11:52450949-52450681 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 184
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 114, 132

Conread position: 127-380
Cow position: chr11:2772450-2772706 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 183
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 84, 91

Conread position: 127-380
Cow position: chr11:71957767-71957511 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 180
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 102, 120

Conread position: 132-328
Cow position: chr11:44043349-44043548 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 75, 86

Conread position: 145-380
Cow position: chr11:63652516-63652281 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 66, 103

Conread position: 157-380
Cow position: chr11:57759993-57760219 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 160
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 72, 90

Conread position: 175-383
Cow position: chr11:34914559-34914768 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 142
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 34, 70

Show alignments to all cow chromosomes.