Cow genome map

Conread name: rspc008_n3.y1

Conread position: 1-382
Cow position: chr15:14718967-14719355 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 262
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 19, 56

Conread position: 5-378
Cow position: chr15:67629-67251 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 16

Conread position: 9-387
Cow position: chr15:51228057-51228419 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 254
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 92, 13

Conread position: 16-380
Cow position: chr15:25132909-25133279 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 234

Conread position: 17-378
Cow position: chr15:1785714-1786074 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 251
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 73, 204

Conread position: 17-380
Cow position: chr15:2015419-2015786 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 248
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 73, 103

Conread position: 17-380
Cow position: chr15:12442473-12442843 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 233

Conread position: 21-388
Cow position: chr15:13417217-13417586 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 108

Conread position: 22-384
Cow position: chr15:17287931-17288310 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 269
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 69, 122

Conread position: 23-229
Cow position: chr15:16801228-16801437 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 67, 198

Conread position: 23-242
Cow position: chr15:33753328-33753106 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 67, 198

Conread position: 23-249
Cow position: chr15:13179-12946 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 161
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 67, 0

Conread position: 23-276
Cow position: chr15:20647118-20647377 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 180
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 67, 227

Conread position: 23-289
Cow position: chr15:33335418-33335690 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 191
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 67, 198

Conread position: 23-333
Cow position: chr15:678015-678331 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-333
Cow position: chr15:4122737-4123053 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-333
Cow position: chr15:6563847-6564162 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 220
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 67, 31

Conread position: 23-333
Cow position: chr15:16784280-16784590 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 26

Conread position: 23-333
Cow position: chr15:22539885-22539571 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 219
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 67, 268

Conread position: 23-364
Cow position: chr15:18264808-18264460 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 237
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 20, 199

Conread position: 23-378
Cow position: chr15:25069540-25069179 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-378
Cow position: chr15:26591392-26591035 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 31

Conread position: 23-379
Cow position: chr15:5020315-5020678 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 228

Conread position: 23-379
Cow position: chr15:21637226-21637589 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-379
Cow position: chr15:21806803-21807165 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-379
Cow position: chr15:31768596-31768235 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 194

Conread position: 23-380
Cow position: chr15:2533685-2534048 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr15:2644392-2644031 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 93

Conread position: 23-380
Cow position: chr15:4139954-4139597 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 207

Conread position: 23-380
Cow position: chr15:4822117-4821754 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 235

Conread position: 23-380
Cow position: chr15:6158138-6158497 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr15:6616752-6617115 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr15:6758523-6758160 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr15:7267555-7267918 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr15:7512402-7512039 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 23-380
Cow position: chr15:7985473-7985110 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr15:8576103-8576469 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 227

Conread position: 23-380
Cow position: chr15:9620447-9620083 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 228

Conread position: 23-380
Cow position: chr15:11596428-11596065 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr15:12859095-12859458 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr15:17074409-17074046 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 199

Conread position: 23-380
Cow position: chr15:20404729-20404366 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 50

Conread position: 23-380
Cow position: chr15:20944325-20944689 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 228

Conread position: 23-380
Cow position: chr15:21152867-21152504 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr15:23666540-23666177 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr15:25165150-25164787 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr15:36329506-36329143 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr15:36940429-36940066 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr15:41029365-41029002 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr15:44576352-44576715 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr15:45210966-45211329 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr15:45944742-45944381 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 243
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 67, 238

Conread position: 23-380
Cow position: chr15:50142213-50142576 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr15:50151653-50152017 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr15:50308521-50308155 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 23-380
Cow position: chr15:52208539-52208180 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 20

Conread position: 24-380
Cow position: chr15:4214115-4214477 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 226

Conread position: 30-377
Cow position: chr15:3007878-3007525 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 220

Conread position: 31-384
Cow position: chr15:40171411-40171054 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 40

Conread position: 32-379
Cow position: chr15:26933007-26933358 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 223

Conread position: 32-387
Cow position: chr15:20173032-20172672 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 22

Conread position: 45-380
Cow position: chr15:25203995-25203655 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 235
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 45, 18

Conread position: 63-276
Cow position: chr15:18061200-18060981 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 158
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 27, 158

Conread position: 69-268
Cow position: chr15:23552845-23552640 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 146
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 21, 152

Conread position: 71-354
Cow position: chr15:19655027-19655306 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 204
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 138, 17

Conread position: 80-384
Cow position: chr15:23057546-23057243 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 9

Conread position: 86-387
Cow position: chr15:43079475-43079173 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 219
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 75, 11

Conread position: 92-379
Cow position: chr15:38285328-38285618 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 206
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 115, 126

Conread position: 93-379
Cow position: chr15:24649284-24649003 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 194
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 111, 18

Conread position: 93-380
Cow position: chr15:489248-488958 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 200
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 136, 154

Conread position: 94-380
Cow position: chr15:49191538-49191249 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 201
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 115, 153

Conread position: 101-380
Cow position: chr15:34240126-34240408 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 199
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 106, 117

Conread position: 114-380
Cow position: chr15:6997988-6997719 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 192
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 93, 104

Conread position: 129-380
Cow position: chr15:3153980-3154234 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 178
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 100, 0

Show alignments to all cow chromosomes.