Cow genome map
| Conread name: | rspc008_n3.y1 |
| Conread position: | 1-309 |
| Cow position: | chr16:15116393-15116087 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 41, 189 |
| Conread position: | 2-391 |
| Cow position: | chr16:19067073-19067471 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 18, 104 |
| Conread position: | 9-385 |
| Cow position: | chr16:40382921-40383293 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 68, 12 |
| Conread position: | 15-384 |
| Cow position: | chr16:16032483-16032855 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 15 |
| Conread position: | 17-270 |
| Cow position: | chr16:41575843-41576097 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 73, 181 |
| Conread position: | 17-379 |
| Cow position: | chr16:5665701-5666067 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 231 |
| Conread position: | 18-285 |
| Cow position: | chr16:36247071-36247330 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 72, 112 |
| Conread position: | 19-309 |
| Cow position: | chr16:22386015-22386309 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 212 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 23, 45 |
| Conread position: | 19-358 |
| Cow position: | chr16:38177370-38177707 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 235 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 144, 77 |
| Conread position: | 19-379 |
| Cow position: | chr16:25157798-25157440 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 206, 43 |
| Conread position: | 21-380 |
| Cow position: | chr16:26389092-26389451 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 29, 178 |
| Conread position: | 23-312 |
| Cow position: | chr16:26990334-26990040 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 210 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-333 |
| Cow position: | chr16:40879198-40879514 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-351 |
| Cow position: | chr16:12160677-12160344 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 197 |
| Conread position: | 23-354 |
| Cow position: | chr16:7303362-7303700 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 228 |
| Conread position: | 23-378 |
| Cow position: | chr16:26627358-26627719 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 227 |
| Conread position: | 23-380 |
| Cow position: | chr16:2960285-2960648 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr16:5525493-5525132 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 247 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 67, 227 |
| Conread position: | 23-380 |
| Cow position: | chr16:6677327-6677686 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 198 |
| Conread position: | 23-380 |
| Cow position: | chr16:7385371-7385734 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr16:8883539-8883902 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr16:10372828-10372467 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 70, 15 |
| Conread position: | 23-380 |
| Cow position: | chr16:11633238-11632875 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 23-380 |
| Cow position: | chr16:12485694-12485331 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr16:13721983-13721619 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 228 |
| Conread position: | 23-380 |
| Cow position: | chr16:14040031-14040394 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr16:15904610-15904252 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 20 |
| Conread position: | 23-380 |
| Cow position: | chr16:16150142-16149779 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr16:16942322-16942685 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr16:18212589-18212226 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 227 |
| Conread position: | 23-380 |
| Cow position: | chr16:18650978-18650615 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 227 |
| Conread position: | 23-380 |
| Cow position: | chr16:18975474-18975837 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr16:19081658-19082015 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 70 |
| Conread position: | 23-380 |
| Cow position: | chr16:20278446-20278809 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 227 |
| Conread position: | 23-380 |
| Cow position: | chr16:23773069-23772706 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr16:24209792-24209429 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr16:24407516-24407881 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 229 |
| Conread position: | 23-380 |
| Cow position: | chr16:24987898-24987534 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr16:25075199-25075562 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr16:25879922-25880284 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr16:26658571-26658933 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr16:28193694-28193332 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 57 |
| Conread position: | 23-380 |
| Cow position: | chr16:32118185-32118546 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 248 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr16:35342895-35342532 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr16:42211102-42211465 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 227 |
| Conread position: | 23-380 |
| Cow position: | chr16:47247678-47248057 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 23-380 |
| Cow position: | chr16:47403986-47404349 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 198 |
| Conread position: | 23-380 |
| Cow position: | chr16:49096570-49096933 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 227 |
| Conread position: | 23-380 |
| Cow position: | chr16:49780344-49779981 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr16:52952634-52952271 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-386 |
| Cow position: | chr16:22799098-22798729 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 198 |
| Conread position: | 23-391 |
| Cow position: | chr16:15311887-15312262 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 227 |
| Conread position: | 27-382 |
| Cow position: | chr16:27013007-27013361 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 224 |
| Conread position: | 29-380 |
| Cow position: | chr16:24615463-24615106 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 221 |
| Conread position: | 32-380 |
| Cow position: | chr16:44450558-44450912 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 189 |
| Conread position: | 33-387 |
| Cow position: | chr16:22108814-22108462 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 59 |
| Conread position: | 54-386 |
| Cow position: | chr16:7043295-7042957 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 234 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 36, 60 |
| Conread position: | 61-376 |
| Cow position: | chr16:45532650-45532339 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 230 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 34, 70 |
| Conread position: | 65-380 |
| Cow position: | chr16:7717853-7718176 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 229 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 25, 156 |
| Conread position: | 68-380 |
| Cow position: | chr16:24753276-24752958 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 153 |
| Conread position: | 71-379 |
| Cow position: | chr16:10866411-10866724 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 19, 150 |
| Conread position: | 89-380 |
| Cow position: | chr16:2426428-2426134 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 140, 158 |
| Conread position: | 89-380 |
| Cow position: | chr16:23877149-23877443 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 118, 129 |
| Conread position: | 89-380 |
| Cow position: | chr16:29107469-29107175 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 118, 129 |
| Conread position: | 89-380 |
| Cow position: | chr16:39788329-39788035 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 210 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 118, 129 |
| Conread position: | 92-391 |
| Cow position: | chr16:27537692-27537995 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 115, 126 |
| Conread position: | 99-380 |
| Cow position: | chr16:34022168-34021883 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 201 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 108, 149 |
| Conread position: | 114-380 |
| Cow position: | chr16:25254167-25254432 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 93, 18 |
| Conread position: | 116-381 |
| Cow position: | chr16:32838368-32838102 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 111, 179 |
| Conread position: | 124-380 |
| Cow position: | chr16:7712326-7712585 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 105, 123 |
| Conread position: | 132-380 |
| Cow position: | chr16:44051175-44050923 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 135-378 |
| Cow position: | chr16:48933222-48932981 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 72, 149 |
| Conread position: | 140-378 |
| Cow position: | chr16:55674039-55674277 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 67, 81 |
| Conread position: | 146-380 |
| Cow position: | chr16:25483568-25483801 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 84, 60 |
| Conread position: | 156-380 |
| Cow position: | chr16:5345957-5345730 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 157-380 |
| Cow position: | chr16:23027461-23027684 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 87, 100 |
Show alignments to all cow chromosomes.