Cow genome map
| Conread name: | rspc008_n3.y1 |
| Conread position: | 1-302 |
| Cow position: | chr17:18384775-18384470 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 42, 56 |
| Conread position: | 1-317 |
| Cow position: | chr17:43443350-43443024 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 19, 58 |
| Conread position: | 1-330 |
| Cow position: | chr17:22500523-22500865 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 19, 166 |
| Conread position: | 17-387 |
| Cow position: | chr17:15701538-15701173 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 75 |
| Conread position: | 18-364 |
| Cow position: | chr17:13935986-13935640 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 249 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 5, 164 |
| Conread position: | 19-364 |
| Cow position: | chr17:24312288-24312636 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 122 |
| Conread position: | 20-380 |
| Cow position: | chr17:43471428-43471062 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 201 |
| Conread position: | 21-384 |
| Cow position: | chr17:1654600-1654226 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 259 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 69, 152 |
| Conread position: | 22-262 |
| Cow position: | chr17:14293512-14293270 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 187, 30 |
| Conread position: | 23-217 |
| Cow position: | chr17:15708827-15708629 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 23-242 |
| Cow position: | chr17:30182414-30182193 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 67, 46 |
| Conread position: | 23-274 |
| Cow position: | chr17:1672464-1672720 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 67, 121 |
| Conread position: | 23-312 |
| Cow position: | chr17:37528806-37528511 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 227 |
| Conread position: | 23-365 |
| Cow position: | chr17:24785356-24785704 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 238 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-377 |
| Cow position: | chr17:15328447-15328806 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 226 |
| Conread position: | 23-379 |
| Cow position: | chr17:4480716-4480355 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 45 |
| Conread position: | 23-379 |
| Cow position: | chr17:23321253-23320892 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 7 |
| Conread position: | 23-379 |
| Cow position: | chr17:38991918-38992280 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 227 |
| Conread position: | 23-380 |
| Cow position: | chr17:184313-184676 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 227 |
| Conread position: | 23-380 |
| Cow position: | chr17:1970317-1970680 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 227 |
| Conread position: | 23-380 |
| Cow position: | chr17:2265354-2265717 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 198 |
| Conread position: | 23-380 |
| Cow position: | chr17:3652561-3652198 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 227 |
| Conread position: | 23-380 |
| Cow position: | chr17:6612188-6612551 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr17:6955805-6956168 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 227 |
| Conread position: | 23-380 |
| Cow position: | chr17:15094296-15093933 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr17:15558738-15559101 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr17:15809153-15809517 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 242 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 67, 228 |
| Conread position: | 23-380 |
| Cow position: | chr17:16505581-16505217 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 227 |
| Conread position: | 23-380 |
| Cow position: | chr17:17957763-17958125 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 197 |
| Conread position: | 23-380 |
| Cow position: | chr17:20225768-20226130 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr17:20390940-20391303 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 23-380 |
| Cow position: | chr17:20546303-20546666 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr17:21716628-21716991 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr17:25834583-25834946 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr17:26829578-26829215 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr17:29824796-29824431 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 23-380 |
| Cow position: | chr17:34236085-34235722 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 227 |
| Conread position: | 23-380 |
| Cow position: | chr17:36284433-36284796 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr17:39824028-39823665 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 198 |
| Conread position: | 24-380 |
| Cow position: | chr17:8212226-8212583 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 17 |
| Conread position: | 27-337 |
| Cow position: | chr17:38701044-38701342 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 181, 65 |
| Conread position: | 27-380 |
| Cow position: | chr17:22249082-22248723 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 223 |
| Conread position: | 30-312 |
| Cow position: | chr17:36159862-36159580 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 13, 165 |
| Conread position: | 31-378 |
| Cow position: | chr17:6122957-6123310 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 240 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 59, 219 |
| Conread position: | 58-322 |
| Cow position: | chr17:41318970-41318717 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 167 |
| Conread position: | 63-378 |
| Cow position: | chr17:19215205-19214883 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 222 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 75-377 |
| Cow position: | chr17:27052626-27052938 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 176 |
| Conread position: | 81-380 |
| Cow position: | chr17:34564575-34564875 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 126, 15 |
| Conread position: | 87-380 |
| Cow position: | chr17:2081187-2081479 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 31 |
| Conread position: | 89-379 |
| Cow position: | chr17:21181722-21182015 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 89-380 |
| Cow position: | chr17:24031036-24031326 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 140, 160 |
| Conread position: | 89-380 |
| Cow position: | chr17:43991720-43992013 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 140, 32 |
| Conread position: | 92-378 |
| Cow position: | chr17:16700239-16699950 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 206 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 115, 126 |
| Conread position: | 92-380 |
| Cow position: | chr17:31671662-31671371 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 205 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 115, 126 |
| Conread position: | 98-377 |
| Cow position: | chr17:38759018-38758740 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 59, 94 |
| Conread position: | 123-377 |
| Cow position: | chr17:31092408-31092150 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 88, 149 |
| Conread position: | 126-301 |
| Cow position: | chr17:34733613-34733787 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 156-380 |
| Cow position: | chr17:400313-400086 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 51, 62 |
Show alignments to all cow chromosomes.