Cow genome map
| Conread name: | rspc008_n3.y1 |
| Conread position: | 2-373 |
| Cow position: | chr21:13199378-13199742 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 44 |
| Conread position: | 2-383 |
| Cow position: | chr21:21000931-21000550 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 274 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 16-386 |
| Cow position: | chr21:31499464-31499834 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 17-365 |
| Cow position: | chr21:33983813-33983457 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 242 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 18-378 |
| Cow position: | chr21:24697625-24697977 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 35 |
| Conread position: | 19-387 |
| Cow position: | chr21:38020648-38021018 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 85 |
| Conread position: | 23-242 |
| Cow position: | chr21:34823644-34823866 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-315 |
| Cow position: | chr21:6966004-6965707 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-367 |
| Cow position: | chr21:30850330-30850680 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 227 |
| Conread position: | 23-378 |
| Cow position: | chr21:11509409-11509768 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 240 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 61, 198 |
| Conread position: | 23-378 |
| Cow position: | chr21:30966475-30966114 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 228 |
| Conread position: | 23-378 |
| Cow position: | chr21:47168428-47168790 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-379 |
| Cow position: | chr21:26875060-26875421 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 31 |
| Conread position: | 23-380 |
| Cow position: | chr21:4719352-4718989 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 227 |
| Conread position: | 23-380 |
| Cow position: | chr21:7047714-7047354 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 237 |
| Conread position: | 23-380 |
| Cow position: | chr21:9208781-9209138 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 21 |
| Conread position: | 23-380 |
| Cow position: | chr21:11144382-11144019 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr21:13735693-13735331 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 226 |
| Conread position: | 23-380 |
| Cow position: | chr21:16575979-16575616 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr21:23329875-23329512 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr21:23341119-23341482 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 227 |
| Conread position: | 23-380 |
| Cow position: | chr21:26628236-26628598 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 189 |
| Conread position: | 23-380 |
| Cow position: | chr21:26633762-26633399 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr21:26757255-26756892 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr21:27148084-27147721 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 235 |
| Conread position: | 23-380 |
| Cow position: | chr21:30297947-30298310 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr21:31949884-31950244 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 227 |
| Conread position: | 23-380 |
| Cow position: | chr21:32237807-32238170 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 198 |
| Conread position: | 23-380 |
| Cow position: | chr21:33710032-33709669 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr21:36892764-36892401 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr21:37923644-37924007 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-380 |
| Cow position: | chr21:39508501-39508139 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 184, 56 |
| Conread position: | 23-380 |
| Cow position: | chr21:41796253-41795894 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 21 |
| Conread position: | 23-380 |
| Cow position: | chr21:42917261-42917624 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 23-380 |
| Cow position: | chr21:48273729-48273367 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-381 |
| Cow position: | chr21:32773403-32773767 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 23-386 |
| Cow position: | chr21:36376458-36376817 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 66 |
| Conread position: | 23-387 |
| Cow position: | chr21:5642371-5641999 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 32 |
| Conread position: | 23-387 |
| Cow position: | chr21:36506370-36506004 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 49 |
| Conread position: | 27-222 |
| Cow position: | chr21:33901232-33901036 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 63, 184 |
| Conread position: | 27-378 |
| Cow position: | chr21:47977739-47978096 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 194 |
| Conread position: | 27-380 |
| Cow position: | chr21:39470292-39469934 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 223 |
| Conread position: | 30-380 |
| Cow position: | chr21:7597796-7597440 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 220 |
| Conread position: | 35-386 |
| Cow position: | chr21:28872291-28872634 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 61, 45 |
| Conread position: | 42-380 |
| Cow position: | chr21:25479758-25480102 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 179 |
| Conread position: | 68-380 |
| Cow position: | chr21:7038680-7038362 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 22, 184 |
| Conread position: | 73-380 |
| Cow position: | chr21:26855175-26854862 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 222 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 17, 148 |
| Conread position: | 75-380 |
| Cow position: | chr21:3923433-3923742 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 61, 144 |
| Conread position: | 102-381 |
| Cow position: | chr21:42909238-42908963 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 106, 119 |
| Conread position: | 115-380 |
| Cow position: | chr21:11663681-11663413 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 92, 103 |
| Conread position: | 117-380 |
| Cow position: | chr21:21103283-21103549 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 112, 130 |
| Conread position: | 122-380 |
| Cow position: | chr21:31040265-31040004 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 85, 96 |
| Conread position: | 123-323 |
| Cow position: | chr21:33139009-33139212 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 106, 124 |
| Conread position: | 142-380 |
| Cow position: | chr21:11292296-11292537 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 65, 76 |
| Conread position: | 156-378 |
| Cow position: | chr21:39429224-39429449 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 73, 91 |
| Conread position: | 216-384 |
| Cow position: | chr21:16167506-16167334 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 14, 0 |
Show alignments to all cow chromosomes.