Cow genome map

Conread name: rspc008_n3.y1

Conread position: 1-384
Cow position: chr5:42043952-42044330 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 52

Conread position: 9-380
Cow position: chr5:10479528-10479156 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 12

Conread position: 9-381
Cow position: chr5:4328400-4328750 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 260
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 92, 12

Conread position: 15-380
Cow position: chr5:56931769-56931403 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 218
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 75, 120

Conread position: 17-382
Cow position: chr5:6901649-6901283 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 13

Conread position: 18-379
Cow position: chr5:31284977-31285344 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 220
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 72, 131

Conread position: 19-387
Cow position: chr5:45284498-45284128 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 155

Conread position: 20-380
Cow position: chr5:66337973-66338333 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 246
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 70, 133

Conread position: 20-386
Cow position: chr5:10772709-10772336 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 202

Conread position: 23-215
Cow position: chr5:29223140-29222944 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 137
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 67, 0

Conread position: 23-263
Cow position: chr5:6585328-6585082 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 168
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 67, 14

Conread position: 23-275
Cow position: chr5:12212658-12212917 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 179
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 67, 228

Conread position: 23-277
Cow position: chr5:27195937-27195677 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 170
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 67, 198

Conread position: 23-295
Cow position: chr5:9002985-9002708 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 188
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 67, 91

Conread position: 23-296
Cow position: chr5:4434379-4434100 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 191
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 67, 227

Conread position: 23-296
Cow position: chr5:54136513-54136233 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 198
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 67, 228

Conread position: 23-312
Cow position: chr5:10066425-10066130 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 205
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 70, 227

Conread position: 23-312
Cow position: chr5:18667432-18667727 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 206
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 67, 227

Conread position: 23-312
Cow position: chr5:26073661-26073368 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 204
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 67, 34

Conread position: 23-312
Cow position: chr5:58199135-58199429 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 204
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 67, 49

Conread position: 23-317
Cow position: chr5:67813987-67814287 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 215
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 67, 198

Conread position: 23-323
Cow position: chr5:44617270-44617576 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 216
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 67, 227

Conread position: 23-333
Cow position: chr5:24577561-24577878 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-351
Cow position: chr5:41067139-41067470 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 70

Conread position: 23-367
Cow position: chr5:29256089-29255739 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-377
Cow position: chr5:37380211-37380571 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 23-378
Cow position: chr5:6694659-6695019 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-379
Cow position: chr5:4754008-4753647 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-379
Cow position: chr5:72856999-72857363 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 228

Conread position: 23-380
Cow position: chr5:443184-442821 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 23-380
Cow position: chr5:445604-445967 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr5:1059442-1059079 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr5:1395337-1394972 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 229

Conread position: 23-380
Cow position: chr5:2395183-2394826 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr5:2976911-2977275 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 228

Conread position: 23-380
Cow position: chr5:4015747-4015384 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 235

Conread position: 23-380
Cow position: chr5:4683375-4683013 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 197

Conread position: 23-380
Cow position: chr5:4963261-4962899 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 23-380
Cow position: chr5:5106349-5106710 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 197

Conread position: 23-380
Cow position: chr5:6060506-6060144 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 197

Conread position: 23-380
Cow position: chr5:6455538-6455175 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr5:10921970-10922333 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 91

Conread position: 23-380
Cow position: chr5:11631860-11631497 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 198

Conread position: 23-380
Cow position: chr5:18118850-18118487 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 227

Conread position: 23-380
Cow position: chr5:26052856-26053219 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr5:28012982-28013345 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr5:29634554-29634917 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr5:31709425-31709779 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 243
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr5:36369867-36369504 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr5:39362997-39363360 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 144

Conread position: 23-380
Cow position: chr5:41586399-41586762 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr5:44275720-44276083 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr5:45179721-45179361 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 14

Conread position: 23-380
Cow position: chr5:46667199-46667559 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr5:46816977-46816616 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 83

Conread position: 23-380
Cow position: chr5:48026393-48026756 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr5:49521824-49522189 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 98

Conread position: 23-380
Cow position: chr5:51166184-51165821 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 23-380
Cow position: chr5:52823082-52822721 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 83

Conread position: 23-380
Cow position: chr5:53075745-53075382 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr5:54951997-54951629 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr5:55722654-55723017 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 23-380
Cow position: chr5:57336239-57335876 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr5:58192043-58192403 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 247
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 50, 92

Conread position: 23-380
Cow position: chr5:58900919-58900556 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr5:59064569-59064931 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 23-380
Cow position: chr5:59146733-59147095 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr5:64061453-64061815 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 9

Conread position: 23-387
Cow position: chr5:15677186-15677551 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 32

Conread position: 23-423
Cow position: chr5:42283295-42283696 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 70

Conread position: 27-362
Cow position: chr5:38379121-38379456 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 167

Conread position: 27-378
Cow position: chr5:54622744-54623101 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 103

Conread position: 27-390
Cow position: chr5:64009590-64009227 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 45

Conread position: 31-380
Cow position: chr5:39936233-39936590 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 188

Conread position: 35-380
Cow position: chr5:47565175-47564829 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 206
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 176, 7

Conread position: 42-380
Cow position: chr5:38662870-38663209 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 238
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 48, 12

Conread position: 42-386
Cow position: chr5:18901464-18901807 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 236
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 48, 82

Conread position: 54-380
Cow position: chr5:39216411-39216743 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 167

Conread position: 54-380
Cow position: chr5:68273693-68273361 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 196

Conread position: 59-380
Cow position: chr5:43349955-43350282 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 162

Conread position: 60-380
Cow position: chr5:54360959-54360633 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 161

Conread position: 65-378
Cow position: chr5:27058472-27058153 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 156

Conread position: 66-380
Cow position: chr5:75754956-75754636 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 222
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 24, 184

Conread position: 68-380
Cow position: chr5:49102994-49103312 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 182

Conread position: 71-380
Cow position: chr5:27907295-27906980 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 218
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 22, 179

Conread position: 89-336
Cow position: chr5:11780687-11780440 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 179
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 75, 41

Conread position: 92-380
Cow position: chr5:4041334-4041625 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 205
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 115, 126

Conread position: 93-310
Cow position: chr5:62384576-62384800 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 160
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 77, 71

Conread position: 96-380
Cow position: chr5:47565584-47565297 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 199
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 115, 151

Conread position: 99-380
Cow position: chr5:12325385-12325101 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 201
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 108, 119

Conread position: 115-380
Cow position: chr5:407661-407929 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 193
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 92, 103

Conread position: 115-380
Cow position: chr5:11986960-11986696 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 192
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 92, 103

Conread position: 117-386
Cow position: chr5:50189174-50189442 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 181
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 112, 100

Conread position: 120-380
Cow position: chr5:23565488-23565751 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 188
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 87, 98

Conread position: 127-380
Cow position: chr5:36410208-36409952 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 175
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 102, 120

Conread position: 127-380
Cow position: chr5:43395524-43395780 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 183
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 19, 6

Conread position: 142-380
Cow position: chr5:38883441-38883201 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 165
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 99, 0

Conread position: 142-380
Cow position: chr5:59518769-59518528 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 174
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 65, 76

Conread position: 145-378
Cow position: chr5:37758590-37758355 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 175
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 89, 101

Show alignments to all cow chromosomes.