Cow genome map

Conread name: rspc008_n3.y1

Conread position: 1-369
Cow position: chr7:55964731-55965093 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 237
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 44, 61

Conread position: 4-383
Cow position: chr7:26130187-26129808 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 259
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 38, 51

Conread position: 6-296
Cow position: chr7:66273777-66273479 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 213
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 15, 52

Conread position: 6-302
Cow position: chr7:45959313-45959612 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 198
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 95, 19

Conread position: 17-354
Cow position: chr7:33392233-33392581 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 235
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 72, 179

Conread position: 17-377
Cow position: chr7:62732324-62732698 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 17-380
Cow position: chr7:24422988-24423357 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 233

Conread position: 17-384
Cow position: chr7:36096388-36096763 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 38

Conread position: 18-268
Cow position: chr7:20829370-20829618 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 184
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 71, 156

Conread position: 18-380
Cow position: chr7:45170882-45171250 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 232

Conread position: 18-385
Cow position: chr7:59985935-59986291 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 113

Conread position: 18-389
Cow position: chr7:27456462-27456088 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 242

Conread position: 20-380
Cow position: chr7:19957264-19956898 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 230

Conread position: 20-380
Cow position: chr7:29363653-29363289 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 230

Conread position: 21-380
Cow position: chr7:57666993-57666616 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 258
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 69, 0

Conread position: 23-266
Cow position: chr7:26926821-26926572 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 170
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 67, 198

Conread position: 23-276
Cow position: chr7:12556-12297 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 177
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 67, 227

Conread position: 23-313
Cow position: chr7:6666856-6667152 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 209
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 67, 198

Conread position: 23-323
Cow position: chr7:24827183-24827489 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-333
Cow position: chr7:12773263-12773579 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-333
Cow position: chr7:54823066-54822750 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-337
Cow position: chr7:113957-114276 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 223
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 67, 117

Conread position: 23-338
Cow position: chr7:21323617-21323938 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-366
Cow position: chr7:14538984-14539333 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-367
Cow position: chr7:25230387-25230735 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 88

Conread position: 23-367
Cow position: chr7:25416291-25416641 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-378
Cow position: chr7:37190022-37190383 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-379
Cow position: chr7:64012781-64013143 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 247
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr7:548130-548492 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr7:899900-899537 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr7:982239-981877 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 234

Conread position: 23-380
Cow position: chr7:1441480-1441120 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 237

Conread position: 23-380
Cow position: chr7:3297324-3296960 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 228

Conread position: 23-380
Cow position: chr7:7249410-7249047 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr7:7277912-7278275 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 23-380
Cow position: chr7:11440475-11440112 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 90

Conread position: 23-380
Cow position: chr7:11460781-11460419 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 198

Conread position: 23-380
Cow position: chr7:14131464-14131827 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr7:18865348-18865711 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr7:21124314-21123952 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 226

Conread position: 23-380
Cow position: chr7:22598371-22598734 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr7:23140908-23141271 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 198

Conread position: 23-380
Cow position: chr7:27573173-27573533 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr7:33308888-33308526 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 92

Conread position: 23-380
Cow position: chr7:34229376-34229013 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr7:34424721-34425082 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 200

Conread position: 23-380
Cow position: chr7:34547947-34548309 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 112

Conread position: 23-380
Cow position: chr7:36343428-36343067 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr7:40203350-40203709 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 244
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr7:46266523-46266879 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 26

Conread position: 23-380
Cow position: chr7:48394015-48394378 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr7:49603216-49602853 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr7:52762176-52761810 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 231

Conread position: 23-380
Cow position: chr7:54807993-54807631 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 14

Conread position: 23-380
Cow position: chr7:60279562-60279199 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr7:61832139-61831776 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr7:62766292-62766655 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 198

Conread position: 23-380
Cow position: chr7:65712002-65712365 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 27-300
Cow position: chr7:53362837-53362566 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 189
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 63, 183

Conread position: 27-333
Cow position: chr7:54790-54478 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 194

Conread position: 27-346
Cow position: chr7:21424009-21423684 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 223

Conread position: 27-362
Cow position: chr7:48762807-48762464 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 224

Conread position: 27-380
Cow position: chr7:54187049-54186690 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 74

Conread position: 29-380
Cow position: chr7:1399328-1399685 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 192

Conread position: 31-232
Cow position: chr7:60741578-60741371 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 142
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 31-380
Cow position: chr7:19463484-19463135 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 180

Conread position: 32-382
Cow position: chr7:32276680-32277018 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 67

Conread position: 34-381
Cow position: chr7:20105888-20105542 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 27

Conread position: 52-378
Cow position: chr7:64355407-64355734 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 41

Conread position: 53-312
Cow position: chr7:35805910-35806170 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 179
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 156, 45

Conread position: 54-378
Cow position: chr7:67435687-67435357 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 167

Conread position: 54-379
Cow position: chr7:19178928-19178598 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 229
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 36, 196

Conread position: 54-380
Cow position: chr7:58875250-58875573 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 230
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 36, 167

Conread position: 54-380
Cow position: chr7:65814512-65814843 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 229
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 36, 166

Conread position: 62-380
Cow position: chr7:27459061-27459385 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 225
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 28, 159

Conread position: 63-380
Cow position: chr7:6808725-6809048 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 158

Conread position: 72-380
Cow position: chr7:55090768-55091082 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 220
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 18, 178

Conread position: 74-309
Cow position: chr7:32586703-32586936 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 39, 23

Conread position: 74-338
Cow position: chr7:56080426-56080686 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 178
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 16, 99

Conread position: 75-380
Cow position: chr7:37166251-37166562 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 146

Conread position: 75-380
Cow position: chr7:65465563-65465874 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 146

Conread position: 89-380
Cow position: chr7:27397579-27397287 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 204
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 140, 158

Conread position: 92-380
Cow position: chr7:49377387-49377096 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 204
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 137, 155

Conread position: 92-380
Cow position: chr7:60463190-60462899 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 202
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 115, 155

Conread position: 92-380
Cow position: chr7:62469761-62470052 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 204
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 137, 155

Conread position: 93-380
Cow position: chr7:54668305-54668015 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 205
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 114, 125

Conread position: 99-380
Cow position: chr7:36507449-36507734 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 196
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 108, 119

Conread position: 101-380
Cow position: chr7:55486622-55486341 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 193
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 128, 250

Conread position: 115-380
Cow position: chr7:12236-11972 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 188
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 92, 132

Conread position: 115-380
Cow position: chr7:20151729-20151997 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 189
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 114, 132

Conread position: 115-380
Cow position: chr7:25845622-25845890 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 190
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 92, 103

Conread position: 115-380
Cow position: chr7:33296642-33296910 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 191
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 92, 103

Conread position: 129-380
Cow position: chr7:67821742-67821997 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 183
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 13, 90

Show alignments to all cow chromosomes.