Cow genome map

Conread name: rspc008_n3.y1

Conread position: 8-217
Cow position: chr9:27450678-27450466 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 149
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 84, 0

Conread position: 9-299
Cow position: chr9:26123894-26124193 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 21

Conread position: 16-380
Cow position: chr9:45383412-45383782 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 205

Conread position: 17-287
Cow position: chr9:2873661-2873938 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 188
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 23, 38

Conread position: 17-380
Cow position: chr9:10857220-10857587 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 51

Conread position: 18-384
Cow position: chr9:777621-777251 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 28

Conread position: 19-387
Cow position: chr9:43538455-43538085 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 34

Conread position: 20-378
Cow position: chr9:49073874-49073513 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 96

Conread position: 23-223
Cow position: chr9:55758635-55758839 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 139
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 23-224
Cow position: chr9:9210336-9210541 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 140
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 23-224
Cow position: chr9:24873762-24873560 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 139
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 73, 151

Conread position: 23-225
Cow position: chr9:45792041-45792246 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 139
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 23-267
Cow position: chr9:52526344-52526594 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 67, 198

Conread position: 23-279
Cow position: chr9:13187397-13187659 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 181
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 67, 227

Conread position: 23-300
Cow position: chr9:54459309-54459026 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 199
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 67, 227

Conread position: 23-310
Cow position: chr9:8387013-8387306 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 201
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 67, 90

Conread position: 23-312
Cow position: chr9:50840625-50840920 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 213
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 67, 198

Conread position: 23-319
Cow position: chr9:8282077-8281779 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 206
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 67, 227

Conread position: 23-336
Cow position: chr9:46667605-46667286 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 221
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 67, 228

Conread position: 23-354
Cow position: chr9:18830931-18831262 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 26

Conread position: 23-365
Cow position: chr9:46627504-46627851 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-379
Cow position: chr9:217923-217550 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 246
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 67, 309

Conread position: 23-379
Cow position: chr9:3806787-3807146 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 247
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 67, 227

Conread position: 23-379
Cow position: chr9:6304628-6304991 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 33

Conread position: 23-379
Cow position: chr9:48795099-48794737 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr9:216818-216455 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr9:1062503-1062140 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr9:1099787-1100140 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 251
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr9:1838148-1838507 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 20

Conread position: 23-380
Cow position: chr9:2681681-2682044 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr9:2857036-2857399 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr9:3052458-3052820 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr9:5430659-5431022 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr9:5452447-5452084 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr9:6707725-6707362 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 243
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 67, 0

Conread position: 23-380
Cow position: chr9:7104038-7103675 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr9:7830710-7830339 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 254
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 67, 50

Conread position: 23-380
Cow position: chr9:9611694-9611331 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 198

Conread position: 23-380
Cow position: chr9:10802866-10803228 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 112

Conread position: 23-380
Cow position: chr9:11478065-11477704 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 243
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 67, 49

Conread position: 23-380
Cow position: chr9:13620804-13620441 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr9:16639467-16639830 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr9:17017947-17018310 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr9:18243790-18243427 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr9:18710686-18711048 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 31

Conread position: 23-380
Cow position: chr9:24423715-24424078 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr9:26325939-26326301 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 226

Conread position: 23-380
Cow position: chr9:28681393-28681756 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 228

Conread position: 23-380
Cow position: chr9:28785537-28785898 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 51

Conread position: 23-380
Cow position: chr9:30186899-30187261 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 228

Conread position: 23-380
Cow position: chr9:31417323-31416960 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 228

Conread position: 23-380
Cow position: chr9:34238566-34238199 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr9:35624507-35624870 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr9:36829859-36829496 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 201

Conread position: 23-380
Cow position: chr9:37174212-37173849 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr9:37253597-37253960 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr9:37908040-37908404 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 228

Conread position: 23-380
Cow position: chr9:39303360-39302997 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr9:42475890-42475531 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr9:43494241-43494604 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr9:43496327-43496690 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr9:45876711-45877074 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr9:47171246-47171609 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 227

Conread position: 23-380
Cow position: chr9:49259314-49258952 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 228

Conread position: 23-380
Cow position: chr9:60409595-60409958 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-380
Cow position: chr9:62818028-62817665 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-380
Cow position: chr9:64012036-64011674 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 23-386
Cow position: chr9:17061165-17060796 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 227

Conread position: 23-388
Cow position: chr9:35565346-35564975 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 24-259
Cow position: chr9:41312847-41312606 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 165
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 66, 197

Conread position: 24-380
Cow position: chr9:59495989-59495628 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 197

Conread position: 27-192
Cow position: chr9:35746693-35746529 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 65, 0

Conread position: 27-337
Cow position: chr9:63563617-63563932 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 194

Conread position: 27-379
Cow position: chr9:1640452-1640823 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 258
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 59, 92

Conread position: 27-380
Cow position: chr9:19545707-19546074 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 223

Conread position: 27-380
Cow position: chr9:44202883-44202524 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 223

Conread position: 33-380
Cow position: chr9:8951847-8951499 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 176

Conread position: 41-362
Cow position: chr9:34676202-34675870 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 91

Conread position: 54-380
Cow position: chr9:3311523-3311845 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 232
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 153, 34

Conread position: 54-380
Cow position: chr9:3717587-3717919 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 167

Conread position: 54-380
Cow position: chr9:9094090-9093758 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 167

Conread position: 55-367
Cow position: chr9:10665128-10665447 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 58-380
Cow position: chr9:6886806-6887134 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 192

Conread position: 58-380
Cow position: chr9:42696200-42696524 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 163

Conread position: 63-380
Cow position: chr9:3058392-3058069 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 187

Conread position: 64-354
Cow position: chr9:56561983-56562284 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 205
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 36, 117

Conread position: 66-381
Cow position: chr9:11156429-11156113 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 228
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 35, 91

Conread position: 67-380
Cow position: chr9:29534059-29534375 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 187
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 140, 151

Conread position: 68-378
Cow position: chr9:45975098-45974784 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 216
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 22, 216

Conread position: 75-386
Cow position: chr9:7089033-7088725 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 221
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 154, 21

Conread position: 86-380
Cow position: chr9:4191576-4191873 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 207
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 143, 161

Conread position: 89-380
Cow position: chr9:2394363-2394069 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 205
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 118, 129

Conread position: 92-380
Cow position: chr9:31361908-31361617 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 207
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 115, 126

Conread position: 99-380
Cow position: chr9:15842405-15842680 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 196
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 108, 119

Conread position: 100-380
Cow position: chr9:50002801-50002518 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 200
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 107, 118

Conread position: 103-380
Cow position: chr9:15670127-15670407 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 197
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 104, 115

Conread position: 115-379
Cow position: chr9:29083278-29083011 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 192
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 92, 103

Conread position: 124-380
Cow position: chr9:56531115-56530856 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 180
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 105, 123

Show alignments to all cow chromosomes.