Cow genome map
| Conread name: | rspc010_b16.y1 |
| Conread position: | 8-151 |
| Cow position: | chr14:25277780-25277645 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 17-164 |
| Cow position: | chr14:29592708-29592857 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 21, 72 |
| Conread position: | 26-187 |
| Cow position: | chr14:15944664-15944832 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 17, 72 |
| Conread position: | 28-184 |
| Cow position: | chr14:38144116-38144272 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 143, 64 |
| Conread position: | 31-169 |
| Cow position: | chr14:18941297-18941434 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 32-184 |
| Cow position: | chr14:31130387-31130539 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 5, 53 |
| Conread position: | 32-184 |
| Cow position: | chr14:40230647-40230797 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 5, 55 |
| Conread position: | 33-163 |
| Cow position: | chr14:31342197-31342069 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 33-176 |
| Cow position: | chr14:11470163-11470304 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 138, 10 |
| Conread position: | 33-177 |
| Cow position: | chr14:27999050-27999193 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 10 |
| Conread position: | 33-184 |
| Cow position: | chr14:8083183-8083034 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 141, 10 |
| Conread position: | 33-184 |
| Cow position: | chr14:30023212-30023362 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 137, 11 |
| Conread position: | 33-187 |
| Cow position: | chr14:45955276-45955122 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 126, 10 |
| Conread position: | 36-155 |
| Cow position: | chr14:11285563-11285447 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 36-163 |
| Cow position: | chr14:21593020-21593142 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 36-164 |
| Cow position: | chr14:20513213-20513086 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 36-164 |
| Cow position: | chr14:23078809-23078933 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 36-164 |
| Cow position: | chr14:23419779-23419652 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 36-164 |
| Cow position: | chr14:26116045-26115918 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 36-169 |
| Cow position: | chr14:18412608-18412740 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 36-169 |
| Cow position: | chr14:50362777-50362646 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 36-176 |
| Cow position: | chr14:5668135-5668275 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 135, 50 |
| Conread position: | 36-176 |
| Cow position: | chr14:8923601-8923741 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 135, 109 |
| Conread position: | 36-176 |
| Cow position: | chr14:12244402-12244536 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 135, 56 |
| Conread position: | 36-176 |
| Cow position: | chr14:15428461-15428324 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 135, 50 |
| Conread position: | 36-176 |
| Cow position: | chr14:26655151-26655291 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 135, 50 |
| Conread position: | 36-176 |
| Cow position: | chr14:27364563-27364423 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 135, 50 |
| Conread position: | 36-178 |
| Cow position: | chr14:12071541-12071683 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 135, 50 |
| Conread position: | 36-181 |
| Cow position: | chr14:36443035-36443176 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 135, 53 |
| Conread position: | 36-181 |
| Cow position: | chr14:36559243-36559385 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 135, 51 |
| Conread position: | 36-184 |
| Cow position: | chr14:5044654-5044514 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 135, 51 |
| Conread position: | 36-184 |
| Cow position: | chr14:10937656-10937510 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 36-184 |
| Cow position: | chr14:13385351-13385204 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 135, 48 |
| Conread position: | 36-184 |
| Cow position: | chr14:28924151-28924003 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 134, 56 |
| Conread position: | 36-184 |
| Cow position: | chr14:37504498-37504351 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 133, 50 |
| Conread position: | 36-184 |
| Cow position: | chr14:50519196-50519339 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 134, 51 |
| Conread position: | 36-185 |
| Cow position: | chr14:39097491-39097340 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 28, 57 |
| Conread position: | 36-186 |
| Cow position: | chr14:13516006-13516153 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 36-186 |
| Cow position: | chr14:21946375-21946234 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 36-187 |
| Cow position: | chr14:28378342-28378191 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 136, 50 |
| Conread position: | 36-188 |
| Cow position: | chr14:12138000-12137850 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 138, 56 |
| Conread position: | 36-189 |
| Cow position: | chr14:24922083-24921931 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 135, 56 |
| Conread position: | 36-195 |
| Cow position: | chr14:18270344-18270187 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 135, 51 |
| Conread position: | 36-195 |
| Cow position: | chr14:20483715-20483877 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 47, 146 |
| Conread position: | 36-195 |
| Cow position: | chr14:35381574-35381416 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 135, 22 |
| Conread position: | 36-196 |
| Cow position: | chr14:15518417-15518578 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 135, 57 |
| Conread position: | 36-196 |
| Cow position: | chr14:44713402-44713242 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 135, 56 |
| Conread position: | 36-257 |
| Cow position: | chr14:19851950-19852173 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 136, 40 |
| Conread position: | 37-151 |
| Cow position: | chr14:40952253-40952138 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 37-176 |
| Cow position: | chr14:19988077-19988216 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 134, 49 |
| Conread position: | 37-184 |
| Cow position: | chr14:28465233-28465380 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 129, 46 |
| Conread position: | 42-150 |
| Cow position: | chr14:42246982-42246874 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 42-151 |
| Cow position: | chr14:7036380-7036488 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 42-164 |
| Cow position: | chr14:29282732-29282611 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 42-164 |
| Cow position: | chr14:33457066-33457186 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 42-169 |
| Cow position: | chr14:48496167-48496293 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 42-170 |
| Cow position: | chr14:10693277-10693404 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 42-176 |
| Cow position: | chr14:5556235-5556103 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 129, 29 |
| Conread position: | 42-176 |
| Cow position: | chr14:26918977-26918839 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 42-176 |
| Cow position: | chr14:34775769-34775903 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 130, 50 |
| Conread position: | 42-176 |
| Cow position: | chr14:37236347-37236219 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 42-182 |
| Cow position: | chr14:33229423-33229559 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 42-184 |
| Cow position: | chr14:11981442-11981302 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 129, 16 |
| Conread position: | 42-185 |
| Cow position: | chr14:1708679-1708822 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 129, 51 |
| Conread position: | 42-185 |
| Cow position: | chr14:21081811-21081668 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 129, 44 |
| Conread position: | 42-185 |
| Cow position: | chr14:28304808-28304950 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 129, 25 |
| Conread position: | 42-187 |
| Cow position: | chr14:1803136-1803283 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 48 |
| Conread position: | 43-160 |
| Cow position: | chr14:24543595-24543711 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 43-176 |
| Cow position: | chr14:49817709-49817840 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 128, 43 |
| Conread position: | 43-181 |
| Cow position: | chr14:29964996-29964858 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 128, 43 |
| Conread position: | 43-184 |
| Cow position: | chr14:35421107-35421249 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 109, 50 |
| Conread position: | 43-197 |
| Cow position: | chr14:36723386-36723232 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 128, 49 |
| Conread position: | 44-176 |
| Cow position: | chr14:7198473-7198341 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 126, 42 |
| Conread position: | 45-164 |
| Cow position: | chr14:35503334-35503222 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 46-170 |
| Cow position: | chr14:2975111-2975233 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 47-192 |
| Cow position: | chr14:27823404-27823262 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 47-195 |
| Cow position: | chr14:46432042-46431893 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 127, 45 |
| Conread position: | 49-184 |
| Cow position: | chr14:20016737-20016872 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 122, 44 |
| Conread position: | 52-164 |
| Cow position: | chr14:41706453-41706564 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 52-178 |
| Cow position: | chr14:6388918-6389039 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 119, 40 |
| Conread position: | 58-170 |
| Cow position: | chr14:40347682-40347789 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 58-189 |
| Cow position: | chr14:25516984-25517113 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 112, 18 |
| Conread position: | 60-189 |
| Cow position: | chr14:48884865-48884995 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 98, 32 |
Show alignments to all cow chromosomes.