Cow genome map
| Conread name: | rspc010_b16.y1 |
| Conread position: | 9-195 |
| Cow position: | chr18:25757320-25757132 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 27, 80 |
| Conread position: | 15-185 |
| Cow position: | chr18:1735596-1735426 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 28, 74 |
| Conread position: | 16-184 |
| Cow position: | chr18:7487233-7487406 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 14, 81 |
| Conread position: | 23-178 |
| Cow position: | chr18:4857711-4857557 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 9 |
| Conread position: | 26-172 |
| Cow position: | chr18:23941606-23941460 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 66, 17 |
| Conread position: | 31-176 |
| Cow position: | chr18:27078884-27079030 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 6, 62 |
| Conread position: | 31-184 |
| Cow position: | chr18:46276282-46276128 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 6, 62 |
| Conread position: | 32-176 |
| Cow position: | chr18:35795201-35795057 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 5, 45 |
| Conread position: | 32-181 |
| Cow position: | chr18:7956169-7956317 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 5, 61 |
| Conread position: | 32-279 |
| Cow position: | chr18:23810099-23809859 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 5, 55 |
| Conread position: | 33-169 |
| Cow position: | chr18:3412385-3412519 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 33-181 |
| Cow position: | chr18:7109154-7109299 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 136, 11 |
| Conread position: | 33-181 |
| Cow position: | chr18:35950059-35950213 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 36-155 |
| Cow position: | chr18:39710133-39710252 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-159 |
| Cow position: | chr18:23821806-23821685 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 36-160 |
| Cow position: | chr18:4715582-4715465 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 36-160 |
| Cow position: | chr18:48112941-48112820 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 36-163 |
| Cow position: | chr18:24759630-24759510 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 36-163 |
| Cow position: | chr18:39623826-39623953 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-164 |
| Cow position: | chr18:23653092-23652964 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 50, 88 |
| Conread position: | 36-164 |
| Cow position: | chr18:24022644-24022765 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 36-164 |
| Cow position: | chr18:28540086-28539960 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 47, 57 |
| Conread position: | 36-169 |
| Cow position: | chr18:32018-32146 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 36-169 |
| Cow position: | chr18:3709256-3709386 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 36-169 |
| Cow position: | chr18:22045388-22045256 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 57, 62 |
| Conread position: | 36-176 |
| Cow position: | chr18:5189667-5189528 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 135, 48 |
| Conread position: | 36-176 |
| Cow position: | chr18:18664347-18664202 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 36-176 |
| Cow position: | chr18:31557134-31556994 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 135, 56 |
| Conread position: | 36-176 |
| Cow position: | chr18:37690176-37690314 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 135, 56 |
| Conread position: | 36-176 |
| Cow position: | chr18:52387194-52387055 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 135, 50 |
| Conread position: | 36-178 |
| Cow position: | chr18:17195319-17195181 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 135, 55 |
| Conread position: | 36-178 |
| Cow position: | chr18:34389357-34389216 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 135, 26 |
| Conread position: | 36-181 |
| Cow position: | chr18:10051773-10051914 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 135, 50 |
| Conread position: | 36-181 |
| Cow position: | chr18:19229944-19230090 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 47, 36 |
| Conread position: | 36-184 |
| Cow position: | chr18:12584813-12584673 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 135, 51 |
| Conread position: | 36-184 |
| Cow position: | chr18:20998389-20998239 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 36-185 |
| Cow position: | chr18:49970627-49970479 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 135, 47 |
| Conread position: | 36-186 |
| Cow position: | chr18:3180437-3180583 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 135, 56 |
| Conread position: | 36-187 |
| Cow position: | chr18:52251831-52251680 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 135, 56 |
| Conread position: | 36-189 |
| Cow position: | chr18:21969779-21969625 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 36-189 |
| Cow position: | chr18:55692842-55692994 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 135, 56 |
| Conread position: | 36-191 |
| Cow position: | chr18:20270988-20270836 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 36-195 |
| Cow position: | chr18:39662805-39662962 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 135, 28 |
| Conread position: | 36-196 |
| Cow position: | chr18:39115092-39114936 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 135, 56 |
| Conread position: | 36-204 |
| Cow position: | chr18:23648948-23649118 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 36-205 |
| Cow position: | chr18:29683448-29683281 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 134, 56 |
| Conread position: | 36-229 |
| Cow position: | chr18:44514112-44514303 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 170, 130 |
| Conread position: | 36-250 |
| Cow position: | chr18:23447035-23446833 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 36-277 |
| Cow position: | chr18:22120859-22120635 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 219, 71 |
| Conread position: | 37-159 |
| Cow position: | chr18:35874105-35874223 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 97, 50 |
| Conread position: | 37-160 |
| Cow position: | chr18:45185899-45186021 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 42-148 |
| Cow position: | chr18:47920778-47920883 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 42-163 |
| Cow position: | chr18:7134310-7134430 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 42-163 |
| Cow position: | chr18:14871573-14871455 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 42-163 |
| Cow position: | chr18:40047468-40047355 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 42-164 |
| Cow position: | chr18:35235991-35235871 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 42-169 |
| Cow position: | chr18:26355013-26354886 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 42-170 |
| Cow position: | chr18:10214158-10214035 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 42-176 |
| Cow position: | chr18:21751410-21751543 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 129, 52 |
| Conread position: | 42-177 |
| Cow position: | chr18:12273690-12273817 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 42-178 |
| Cow position: | chr18:3211910-3212045 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 132, 50 |
| Conread position: | 42-180 |
| Cow position: | chr18:4495854-4495723 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 128, 44 |
| Conread position: | 42-181 |
| Cow position: | chr18:16659400-16659260 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 42-182 |
| Cow position: | chr18:24266375-24266235 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 131, 138 |
| Conread position: | 42-183 |
| Cow position: | chr18:31727612-31727474 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 122, 52 |
| Conread position: | 42-184 |
| Cow position: | chr18:16381890-16382032 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 129, 50 |
| Conread position: | 42-184 |
| Cow position: | chr18:34490313-34490452 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 129, 50 |
| Conread position: | 42-184 |
| Cow position: | chr18:56463699-56463557 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 129, 50 |
| Conread position: | 42-185 |
| Cow position: | chr18:38211188-38211331 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 129, 44 |
| Conread position: | 42-187 |
| Cow position: | chr18:8208393-8208249 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 129, 69 |
| Conread position: | 42-189 |
| Cow position: | chr18:47175350-47175202 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 83, 45 |
| Conread position: | 42-191 |
| Cow position: | chr18:11657688-11657837 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 130, 45 |
| Conread position: | 43-170 |
| Cow position: | chr18:19796890-19796761 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 43-193 |
| Cow position: | chr18:52382937-52383087 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 131, 43 |
| Conread position: | 44-154 |
| Cow position: | chr18:49281029-49280920 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 45-262 |
| Cow position: | chr18:43283721-43283514 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 126, 17 |
| Conread position: | 46-164 |
| Cow position: | chr18:55747721-55747838 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 46-169 |
| Cow position: | chr18:697186-697064 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 46-181 |
| Cow position: | chr18:47417033-47417168 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 129, 46 |
| Conread position: | 46-186 |
| Cow position: | chr18:51405875-51405744 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 125, 46 |
| Conread position: | 48-184 |
| Cow position: | chr18:51757131-51757263 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 53-178 |
| Cow position: | chr18:38669785-38669658 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 39 |
| Conread position: | 58-181 |
| Cow position: | chr18:32960125-32960247 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 113, 34 |
| Conread position: | 59-187 |
| Cow position: | chr18:30295557-30295436 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 112, 43 |
Show alignments to all cow chromosomes.