Cow genome map

Conread name: rspc010_b16.y1

Conread position: 9-181
Cow position: chr21:32392969-32392798 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 86, 14

Conread position: 13-153
Cow position: chr21:28191444-28191585 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 29, 75

Conread position: 15-185
Cow position: chr21:1464444-1464612 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 22, 85

Conread position: 16-169
Cow position: chr21:37014326-37014173 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 20, 71

Conread position: 23-160
Cow position: chr21:48242946-48242807 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 86, 69

Conread position: 26-169
Cow position: chr21:17193637-17193496 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 11, 61

Conread position: 29-178
Cow position: chr21:40475614-40475763 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 126
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 142, 63

Conread position: 29-195
Cow position: chr21:49699924-49699759 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 142, 57

Conread position: 32-164
Cow position: chr21:15444967-15444835 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 5, 61

Conread position: 32-164
Cow position: chr21:44829641-44829509 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 108
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 5, 55

Conread position: 32-176
Cow position: chr21:20153074-20153217 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 5, 35

Conread position: 32-184
Cow position: chr21:42501168-42501319 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 5, 63

Conread position: 32-189
Cow position: chr21:12322615-12322771 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 5, 56

Conread position: 33-160
Cow position: chr21:45537305-45537431 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 59, 0

Conread position: 33-163
Cow position: chr21:6317567-6317439 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 33-176
Cow position: chr21:58563-58707 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 126, 43

Conread position: 33-176
Cow position: chr21:16099444-16099300 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 78, 10

Conread position: 33-178
Cow position: chr21:10264154-10264297 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 138, 10

Conread position: 33-189
Cow position: chr21:11779422-11779264 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 133, 0

Conread position: 35-164
Cow position: chr21:10410344-10410470 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 35-176
Cow position: chr21:11006649-11006508 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 42

Conread position: 36-150
Cow position: chr21:39319287-39319174 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 90
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 62, 0

Conread position: 36-153
Cow position: chr21:7377803-7377687 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 36-154
Cow position: chr21:42905275-42905158 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 36-160
Cow position: chr21:11353183-11353306 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 56, 0

Conread position: 36-163
Cow position: chr21:6291869-6291995 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 56, 0

Conread position: 36-163
Cow position: chr21:8713837-8713711 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 50, 0

Conread position: 36-164
Cow position: chr21:30970058-30970182 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 36-168
Cow position: chr21:46809643-46809513 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 36-169
Cow position: chr21:20160799-20160930 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 56, 0

Conread position: 36-169
Cow position: chr21:28882304-28882435 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 55, 0

Conread position: 36-172
Cow position: chr21:29418691-29418826 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 36-175
Cow position: chr21:30231571-30231437 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 134, 16

Conread position: 36-175
Cow position: chr21:36115726-36115866 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 103
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 135, 0

Conread position: 36-176
Cow position: chr21:4108898-4109037 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 135, 51

Conread position: 36-176
Cow position: chr21:15305176-15305035 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 79, 50

Conread position: 36-176
Cow position: chr21:16796974-16797112 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 135, 113

Conread position: 36-176
Cow position: chr21:17890425-17890563 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 135, 50

Conread position: 36-176
Cow position: chr21:23535832-23535973 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 108, 58

Conread position: 36-176
Cow position: chr21:24296645-24296505 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 13, 32

Conread position: 36-176
Cow position: chr21:27677603-27677743 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 135, 50

Conread position: 36-177
Cow position: chr21:2537016-2536875 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 138, 59

Conread position: 36-178
Cow position: chr21:28244593-28244729 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 115
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 135, 56

Conread position: 36-181
Cow position: chr21:868801-868653 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 73, 0

Conread position: 36-181
Cow position: chr21:8545900-8545754 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 135, 56

Conread position: 36-181
Cow position: chr21:12348888-12349033 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 135, 50

Conread position: 36-181
Cow position: chr21:24757063-24757202 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 135, 51

Conread position: 36-184
Cow position: chr21:3177970-3178113 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 134, 50

Conread position: 36-184
Cow position: chr21:7424891-7424745 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 142, 51

Conread position: 36-184
Cow position: chr21:10004763-10004616 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 56, 0

Conread position: 36-184
Cow position: chr21:27521217-27521074 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 135, 56

Conread position: 36-184
Cow position: chr21:30938543-30938398 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 135, 56

Conread position: 36-184
Cow position: chr21:37928772-37928919 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 135, 56

Conread position: 36-184
Cow position: chr21:40266244-40266392 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 135, 63

Conread position: 36-185
Cow position: chr21:19220675-19220526 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 109
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 135, 40

Conread position: 36-186
Cow position: chr21:17184040-17184187 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 135, 51

Conread position: 36-187
Cow position: chr21:8430977-8430825 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 135, 56

Conread position: 36-187
Cow position: chr21:10072286-10072437 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 110
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 138, 40

Conread position: 36-187
Cow position: chr21:13588883-13589031 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 36-189
Cow position: chr21:32536519-32536664 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 135, 50

Conread position: 36-192
Cow position: chr21:44251720-44251565 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 135, 56

Conread position: 36-195
Cow position: chr21:15271314-15271159 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 135, 57

Conread position: 36-210
Cow position: chr21:14464706-14464879 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 135, 57

Conread position: 37-209
Cow position: chr21:37479469-37479297 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 123
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 134, 48

Conread position: 42-159
Cow position: chr21:24266437-24266318 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 42-163
Cow position: chr21:3360886-3360770 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 42-164
Cow position: chr21:18568510-18568390 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 42-164
Cow position: chr21:41621254-41621375 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 42-164
Cow position: chr21:42017474-42017354 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 70, 45

Conread position: 42-164
Cow position: chr21:42441756-42441877 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 42-164
Cow position: chr21:47784721-47784842 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 42-169
Cow position: chr21:38918327-38918454 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 97
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 42-175
Cow position: chr21:3135740-3135609 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 129, 44

Conread position: 42-176
Cow position: chr21:34209887-34209754 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 132, 44

Conread position: 42-178
Cow position: chr21:38943479-38943346 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 37, 88

Conread position: 42-181
Cow position: chr21:23980053-23979914 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 129, 42

Conread position: 42-181
Cow position: chr21:25344990-25345129 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 128, 50

Conread position: 42-181
Cow position: chr21:27712108-27711969 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 129, 50

Conread position: 42-181
Cow position: chr21:37706286-37706147 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 131, 53

Conread position: 42-184
Cow position: chr21:26828845-26828703 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 129, 50

Conread position: 42-189
Cow position: chr21:5345007-5345154 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 129, 50

Conread position: 43-170
Cow position: chr21:6624287-6624411 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 43-195
Cow position: chr21:24350977-24351130 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 40, 50

Conread position: 44-184
Cow position: chr21:30359216-30359082 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 127, 51

Conread position: 45-164
Cow position: chr21:31258598-31258716 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 100
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 47, 0

Conread position: 45-176
Cow position: chr21:22718652-22718523 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 126, 47

Conread position: 47-184
Cow position: chr21:38482513-38482650 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 124, 63

Conread position: 47-195
Cow position: chr21:34737293-34737440 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 124, 45

Conread position: 48-176
Cow position: chr21:41829246-41829118 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 122, 38

Conread position: 48-184
Cow position: chr21:42227564-42227429 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 123, 44

Conread position: 49-163
Cow position: chr21:34727337-34727450 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 43, 0

Conread position: 59-189
Cow position: chr21:31278331-31278461 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 112, 33

Conread position: 175-352
Cow position: chr21:77375-77198 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 57, 30

Show alignments to all cow chromosomes.