Cow genome map
| Conread name: | rspc010_b16.y1 |
| Conread position: | 8-176 |
| Cow position: | chr24:21606674-21606504 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 27, 86 |
| Conread position: | 10-156 |
| Cow position: | chr24:43027215-43027070 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 92, 7 |
| Conread position: | 15-184 |
| Cow position: | chr24:7917366-7917199 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 156, 34 |
| Conread position: | 24-164 |
| Cow position: | chr24:18324257-18324121 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 26-181 |
| Cow position: | chr24:12241743-12241898 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 145, 66 |
| Conread position: | 26-181 |
| Cow position: | chr24:27906464-27906615 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 11, 5 |
| Conread position: | 31-176 |
| Cow position: | chr24:35210085-35210230 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 140, 14 |
| Conread position: | 32-179 |
| Cow position: | chr24:44896068-44896216 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 5, 53 |
| Conread position: | 33-160 |
| Cow position: | chr24:34302006-34301881 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 33-176 |
| Cow position: | chr24:2359149-2359013 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 138, 10 |
| Conread position: | 33-184 |
| Cow position: | chr24:13586958-13586811 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 138, 12 |
| Conread position: | 33-184 |
| Cow position: | chr24:19186970-19187112 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 140, 10 |
| Conread position: | 33-229 |
| Cow position: | chr24:32609680-32609872 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 139, 10 |
| Conread position: | 34-184 |
| Cow position: | chr24:35960-36110 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 138, 49 |
| Conread position: | 35-189 |
| Cow position: | chr24:12120930-12121084 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 136, 57 |
| Conread position: | 36-150 |
| Cow position: | chr24:17689576-17689463 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 91 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 36-155 |
| Cow position: | chr24:124594-124712 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 36-159 |
| Cow position: | chr24:15473562-15473683 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 36-164 |
| Cow position: | chr24:162038-162165 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 36-164 |
| Cow position: | chr24:6008135-6008011 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 36-164 |
| Cow position: | chr24:8676858-8676984 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 36-164 |
| Cow position: | chr24:18817421-18817548 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 36-164 |
| Cow position: | chr24:32230471-32230345 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 36-164 |
| Cow position: | chr24:42984426-42984554 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-172 |
| Cow position: | chr24:38428078-38427943 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 36-175 |
| Cow position: | chr24:26001422-26001558 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 135, 58 |
| Conread position: | 36-176 |
| Cow position: | chr24:415601-415741 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 135, 50 |
| Conread position: | 36-176 |
| Cow position: | chr24:11836369-11836229 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 134, 56 |
| Conread position: | 36-176 |
| Cow position: | chr24:16640945-16641085 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 134, 56 |
| Conread position: | 36-176 |
| Cow position: | chr24:18874786-18874648 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 133, 36 |
| Conread position: | 36-176 |
| Cow position: | chr24:20801311-20801173 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 135, 50 |
| Conread position: | 36-181 |
| Cow position: | chr24:11028654-11028510 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 135, 44 |
| Conread position: | 36-181 |
| Cow position: | chr24:27149418-27149559 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 135, 52 |
| Conread position: | 36-181 |
| Cow position: | chr24:43445979-43445834 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 111, 55 |
| Conread position: | 36-183 |
| Cow position: | chr24:2992846-2992701 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 135, 32 |
| Conread position: | 36-184 |
| Cow position: | chr24:27040082-27040229 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 36-184 |
| Cow position: | chr24:30483906-30483764 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 135, 56 |
| Conread position: | 36-185 |
| Cow position: | chr24:25947827-25947678 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 135, 56 |
| Conread position: | 36-185 |
| Cow position: | chr24:44987340-44987193 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 36-187 |
| Cow position: | chr24:3193238-3193088 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 135, 51 |
| Conread position: | 36-187 |
| Cow position: | chr24:39910998-39910848 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 36-188 |
| Cow position: | chr24:22079495-22079649 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 135, 50 |
| Conread position: | 36-189 |
| Cow position: | chr24:29677881-29677724 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 36-195 |
| Cow position: | chr24:22419995-22420153 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 135, 56 |
| Conread position: | 36-195 |
| Cow position: | chr24:36286604-36286758 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 134, 59 |
| Conread position: | 36-195 |
| Cow position: | chr24:40055477-40055321 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 135, 56 |
| Conread position: | 36-198 |
| Cow position: | chr24:19535221-19535058 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 116, 54 |
| Conread position: | 36-200 |
| Cow position: | chr24:29587035-29587196 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 135, 46 |
| Conread position: | 36-210 |
| Cow position: | chr24:23046863-23046689 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 135, 50 |
| Conread position: | 36-231 |
| Cow position: | chr24:38006683-38006486 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 52, 158 |
| Conread position: | 36-232 |
| Cow position: | chr24:18810866-18811057 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 36-269 |
| Cow position: | chr24:31383150-31383369 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 135, 58 |
| Conread position: | 37-169 |
| Cow position: | chr24:2261703-2261834 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 37-184 |
| Cow position: | chr24:18405245-18405099 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 134, 70 |
| Conread position: | 42-176 |
| Cow position: | chr24:4635127-4634993 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 129, 50 |
| Conread position: | 42-176 |
| Cow position: | chr24:27066269-27066402 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 129, 44 |
| Conread position: | 42-181 |
| Cow position: | chr24:250497-250358 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 129, 50 |
| Conread position: | 42-183 |
| Cow position: | chr24:38693838-38693700 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 42-185 |
| Cow position: | chr24:3148195-3148053 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 42-185 |
| Cow position: | chr24:18702439-18702581 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 129, 30 |
| Conread position: | 42-187 |
| Cow position: | chr24:18750748-18750893 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 129, 50 |
| Conread position: | 42-189 |
| Cow position: | chr24:22567144-22567291 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 129, 50 |
| Conread position: | 43-169 |
| Cow position: | chr24:34006167-34006043 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 43-184 |
| Cow position: | chr24:5152565-5152706 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 128, 49 |
| Conread position: | 43-184 |
| Cow position: | chr24:39488386-39488527 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 128, 137 |
| Conread position: | 47-192 |
| Cow position: | chr24:19763485-19763340 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 124, 45 |
| Conread position: | 48-160 |
| Cow position: | chr24:17294151-17294040 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 62-160 |
| Cow position: | chr24:29505115-29505018 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 83 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
Show alignments to all cow chromosomes.