Cow genome map

Conread name: rspc010_b16.y1

Conread position: 6-181
Cow position: chr28:13174523-13174348 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 31, 106

Conread position: 6-181
Cow position: chr28:26304095-26304272 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 10, 144

Conread position: 9-181
Cow position: chr28:24767438-24767614 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 14, 86

Conread position: 13-184
Cow position: chr28:21118718-21118889 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 7, 18

Conread position: 19-181
Cow position: chr28:30385200-30385361 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 152, 18

Conread position: 19-184
Cow position: chr28:22170236-22170073 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 82

Conread position: 20-176
Cow position: chr28:30293540-30293385 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 151, 23

Conread position: 22-164
Cow position: chr28:3311174-3311033 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 120
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 15, 10

Conread position: 26-181
Cow position: chr28:17620307-17620153 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 145, 6

Conread position: 26-195
Cow position: chr28:18740437-18740275 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 145, 17

Conread position: 29-169
Cow position: chr28:27218380-27218518 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 29-186
Cow position: chr28:7644799-7644955 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 127
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 141, 23

Conread position: 32-185
Cow position: chr28:16252346-16252200 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 123
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 5, 15

Conread position: 33-176
Cow position: chr28:19994888-19994745 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 50, 10

Conread position: 33-177
Cow position: chr28:15601337-15601476 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 141, 10

Conread position: 33-177
Cow position: chr28:22278570-22278423 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 63, 10

Conread position: 33-178
Cow position: chr28:4163521-4163377 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 138, 10

Conread position: 33-185
Cow position: chr28:3011209-3011057 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 138, 59

Conread position: 35-189
Cow position: chr28:17738090-17737936 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 136, 57

Conread position: 36-150
Cow position: chr28:3729955-3729843 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 36-153
Cow position: chr28:4022737-4022853 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 36-160
Cow position: chr28:11827749-11827872 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 59, 0

Conread position: 36-160
Cow position: chr28:18608304-18608181 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 95
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 36-164
Cow position: chr28:14657777-14657904 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 56, 0

Conread position: 36-164
Cow position: chr28:17680686-17680813 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 50, 0

Conread position: 36-169
Cow position: chr28:8347795-8347927 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 36-175
Cow position: chr28:16857043-16856906 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 135, 50

Conread position: 36-176
Cow position: chr28:3726145-3726007 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 109, 51

Conread position: 36-176
Cow position: chr28:7523352-7523214 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 135, 31

Conread position: 36-176
Cow position: chr28:10615882-10615749 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 135, 56

Conread position: 36-176
Cow position: chr28:21263221-21263355 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 135, 51

Conread position: 36-176
Cow position: chr28:34830218-34830355 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 45, 40

Conread position: 36-178
Cow position: chr28:5630162-5630302 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 116
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 135, 13

Conread position: 36-181
Cow position: chr28:3423841-3423983 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 136, 50

Conread position: 36-181
Cow position: chr28:5552651-5552501 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 36-183
Cow position: chr28:15362643-15362784 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 47, 58

Conread position: 36-184
Cow position: chr28:2892316-2892465 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 135, 0

Conread position: 36-184
Cow position: chr28:6563833-6563685 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 135, 56

Conread position: 36-184
Cow position: chr28:7697918-7697770 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 133, 56

Conread position: 36-184
Cow position: chr28:10958866-10959007 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 135, 50

Conread position: 36-184
Cow position: chr28:11866601-11866459 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 135, 50

Conread position: 36-184
Cow position: chr28:16159807-16159661 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 134, 48

Conread position: 36-184
Cow position: chr28:32014848-32014994 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 135, 56

Conread position: 36-185
Cow position: chr28:8656102-8655957 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 36-185
Cow position: chr28:11346423-11346281 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 65, 0

Conread position: 36-185
Cow position: chr28:26826283-26826432 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 135, 56

Conread position: 36-186
Cow position: chr28:8259692-8259844 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 135, 0

Conread position: 36-187
Cow position: chr28:6321881-6322030 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 87, 22

Conread position: 36-189
Cow position: chr28:13048220-13048071 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 56, 0

Conread position: 36-190
Cow position: chr28:34843511-34843357 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 134, 49

Conread position: 36-195
Cow position: chr28:10495237-10495080 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 135, 59

Conread position: 36-200
Cow position: chr28:13527258-13527420 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 27, 116

Conread position: 37-184
Cow position: chr28:6301146-6301293 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 121
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 134, 55

Conread position: 42-150
Cow position: chr28:2524012-2524119 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 44, 0

Conread position: 42-150
Cow position: chr28:28765833-28765726 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 42-169
Cow position: chr28:5428684-5428565 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 42-169
Cow position: chr28:22183071-22182940 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 65, 0

Conread position: 42-175
Cow position: chr28:20968510-20968376 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 129, 0

Conread position: 42-176
Cow position: chr28:6283421-6283289 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 129, 44

Conread position: 42-176
Cow position: chr28:8716318-8716179 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 42-179
Cow position: chr28:4074039-4074181 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 46, 66

Conread position: 42-181
Cow position: chr28:16200673-16200534 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 115
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 129, 50

Conread position: 43-175
Cow position: chr28:4937171-4937039 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 128, 49

Conread position: 43-176
Cow position: chr28:19262516-19262383 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 109
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 128, 49

Conread position: 43-186
Cow position: chr28:12951488-12951626 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 130, 50

Conread position: 43-187
Cow position: chr28:11562175-11562031 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 128, 49

Conread position: 44-160
Cow position: chr28:8141727-8141842 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 104, 48

Conread position: 44-163
Cow position: chr28:4307825-4307706 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 44-169
Cow position: chr28:10252845-10252722 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 44-176
Cow position: chr28:751297-751429 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 127, 48

Conread position: 44-181
Cow position: chr28:10480736-10480597 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 44-195
Cow position: chr28:11398725-11398575 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 42, 0

Conread position: 45-164
Cow position: chr28:13356298-13356178 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 100
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 71, 48

Conread position: 45-170
Cow position: chr28:4282418-4282295 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 45-178
Cow position: chr28:8165143-8165010 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 126, 47

Conread position: 45-184
Cow position: chr28:117690-117549 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 16, 48

Conread position: 45-184
Cow position: chr28:118682-118823 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 16, 48

Conread position: 46-170
Cow position: chr28:27721767-27721890 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 48-181
Cow position: chr28:5232014-5232144 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 109, 28

Conread position: 50-181
Cow position: chr28:16964889-16964758 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 120, 42

Conread position: 52-176
Cow position: chr28:18761930-18761807 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 119, 40

Conread position: 52-178
Cow position: chr28:19128095-19127969 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 120, 40

Conread position: 52-181
Cow position: chr28:31223479-31223351 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 119, 34

Conread position: 52-184
Cow position: chr28:9100006-9100137 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 119, 40

Conread position: 59-184
Cow position: chr28:3449399-3449518 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 112, 33

Conread position: 66-176
Cow position: chr28:27941689-27941580 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 104, 26

Show alignments to all cow chromosomes.