Cow genome map
| Conread name: | rspc010_b16.y1 |
| Conread position: | 9-224 |
| Cow position: | chr29:42887000-42887212 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 162, 28 |
| Conread position: | 15-199 |
| Cow position: | chr29:6337687-6337869 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 163, 41 |
| Conread position: | 32-176 |
| Cow position: | chr29:4648157-4648017 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 5, 55 |
| Conread position: | 32-184 |
| Cow position: | chr29:24119448-24119295 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 5, 61 |
| Conread position: | 32-195 |
| Cow position: | chr29:2744215-2744055 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 5, 34 |
| Conread position: | 34-164 |
| Cow position: | chr29:44901606-44901479 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 36-150 |
| Cow position: | chr29:18878424-18878311 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 36-159 |
| Cow position: | chr29:29057232-29057353 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 36-160 |
| Cow position: | chr29:14828171-14828049 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 36-160 |
| Cow position: | chr29:28257198-28257320 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 36-164 |
| Cow position: | chr29:22019130-22019005 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 36-164 |
| Cow position: | chr29:23991774-23991647 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 36-164 |
| Cow position: | chr29:30440994-30441121 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 36-164 |
| Cow position: | chr29:41422854-41422727 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 36-169 |
| Cow position: | chr29:24188008-24187876 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 36-169 |
| Cow position: | chr29:30227224-30227093 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 36-169 |
| Cow position: | chr29:31489376-31489511 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 36-169 |
| Cow position: | chr29:36357183-36357315 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 36-175 |
| Cow position: | chr29:26539292-26539425 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 135, 50 |
| Conread position: | 36-176 |
| Cow position: | chr29:5520428-5520289 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 135, 51 |
| Conread position: | 36-176 |
| Cow position: | chr29:5953802-5953661 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 78, 50 |
| Conread position: | 36-176 |
| Cow position: | chr29:16735281-16735421 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 136, 50 |
| Conread position: | 36-176 |
| Cow position: | chr29:23142277-23142137 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 136, 50 |
| Conread position: | 36-176 |
| Cow position: | chr29:23819333-23819189 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 78, 51 |
| Conread position: | 36-176 |
| Cow position: | chr29:42405004-42405144 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 135, 50 |
| Conread position: | 36-179 |
| Cow position: | chr29:8163772-8163629 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 135, 56 |
| Conread position: | 36-180 |
| Cow position: | chr29:4441147-4441006 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 135, 20 |
| Conread position: | 36-180 |
| Cow position: | chr29:5046710-5046852 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 137, 113 |
| Conread position: | 36-181 |
| Cow position: | chr29:4741334-4741189 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 135, 48 |
| Conread position: | 36-181 |
| Cow position: | chr29:20167481-20167623 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 135, 106 |
| Conread position: | 36-181 |
| Cow position: | chr29:26017445-26017302 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 36-181 |
| Cow position: | chr29:28420812-28420957 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 135, 56 |
| Conread position: | 36-181 |
| Cow position: | chr29:35677486-35677341 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 134, 56 |
| Conread position: | 36-184 |
| Cow position: | chr29:11685224-11685372 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 135, 56 |
| Conread position: | 36-184 |
| Cow position: | chr29:16609805-16609953 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 136, 56 |
| Conread position: | 36-184 |
| Cow position: | chr29:30294816-30294668 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 135, 47 |
| Conread position: | 36-184 |
| Cow position: | chr29:41530907-41531054 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 135, 40 |
| Conread position: | 36-185 |
| Cow position: | chr29:14576916-14577061 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 135, 50 |
| Conread position: | 36-185 |
| Cow position: | chr29:24604953-24605100 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 135, 50 |
| Conread position: | 36-187 |
| Cow position: | chr29:18450081-18449934 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 36-189 |
| Cow position: | chr29:14375824-14375671 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 130, 56 |
| Conread position: | 36-195 |
| Cow position: | chr29:32656033-32655881 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 135, 57 |
| Conread position: | 36-195 |
| Cow position: | chr29:35189664-35189823 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 135, 59 |
| Conread position: | 36-198 |
| Cow position: | chr29:17297193-17297353 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 36-201 |
| Cow position: | chr29:15947224-15947390 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 135, 56 |
| Conread position: | 36-268 |
| Cow position: | chr29:35292150-35292375 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 135, 61 |
| Conread position: | 37-181 |
| Cow position: | chr29:11894756-11894900 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 134, 55 |
| Conread position: | 37-181 |
| Cow position: | chr29:41094175-41094316 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 133, 55 |
| Conread position: | 39-197 |
| Cow position: | chr29:774048-774206 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 132, 53 |
| Conread position: | 42-141 |
| Cow position: | chr29:18211726-18211628 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 42-160 |
| Cow position: | chr29:38582031-38582148 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 42-181 |
| Cow position: | chr29:22720580-22720448 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 128, 44 |
| Conread position: | 42-184 |
| Cow position: | chr29:501260-501401 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 43 |
| Conread position: | 42-184 |
| Cow position: | chr29:23874523-23874665 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 129, 50 |
| Conread position: | 42-189 |
| Cow position: | chr29:14746843-14746986 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 129, 50 |
| Conread position: | 42-189 |
| Cow position: | chr29:34483565-34483418 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 17, 52 |
| Conread position: | 42-197 |
| Cow position: | chr29:37618369-37618523 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 129, 45 |
| Conread position: | 42-199 |
| Cow position: | chr29:25474986-25475148 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 45, 131 |
| Conread position: | 43-184 |
| Cow position: | chr29:16164372-16164232 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 43-184 |
| Cow position: | chr29:28087739-28087877 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 128, 43 |
| Conread position: | 44-164 |
| Cow position: | chr29:24365834-24365715 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 44-176 |
| Cow position: | chr29:20643980-20644112 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 32, 43 |
| Conread position: | 44-203 |
| Cow position: | chr29:26211117-26211275 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 126, 40 |
| Conread position: | 44-210 |
| Cow position: | chr29:32656498-32656663 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 43 |
| Conread position: | 46-187 |
| Cow position: | chr29:8669421-8669562 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 119, 47 |
| Conread position: | 47-184 |
| Cow position: | chr29:26777076-26777213 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 124, 45 |
| Conread position: | 55-165 |
| Cow position: | chr29:5218007-5217897 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.