Cow genome map

Conread name: rspc010_k18.y1

Conread position: 1-485
Cow position: chr14:25836437-25836921 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 203

Conread position: 1-578
Cow position: chr14:25795380-25794803 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 51

Conread position: 1-587
Cow position: chr14:25859574-25860160 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 356
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 196, 203

Conread position: 2-556
Cow position: chr14:25795463-25794909 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 170

Conread position: 2-560
Cow position: chr14:25784323-25784875 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 483, 413

Conread position: 2-574
Cow position: chr14:25783987-25784559 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-316
Cow position: chr14:680951-681264 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 194
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 176, 170

Conread position: 3-474
Cow position: chr14:25794622-25794148 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 72

Conread position: 3-497
Cow position: chr14:25784240-25784734 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-556
Cow position: chr14:25795126-25794573 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 287

Conread position: 3-559
Cow position: chr14:25784156-25784712 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-560
Cow position: chr14:25783568-25784125 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 201

Conread position: 3-576
Cow position: chr14:25783400-25783973 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 492, 478

Conread position: 3-576
Cow position: chr14:25783736-25784309 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 249

Conread position: 3-576
Cow position: chr14:25784072-25784645 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 250

Conread position: 3-578
Cow position: chr14:25783652-25784227 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-578
Cow position: chr14:25783904-25784479 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-579
Cow position: chr14:25783820-25784396 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-579
Cow position: chr14:25794874-25794297 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 23

Conread position: 3-594
Cow position: chr14:25795210-25794619 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 250

Conread position: 4-567
Cow position: chr14:25794705-25794142 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 77

Conread position: 5-550
Cow position: chr14:25910726-25911266 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 324
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 192, 16

Conread position: 8-538
Cow position: chr14:3155959-3156489 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 331
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 17, 10

Conread position: 8-560
Cow position: chr14:25794953-25794401 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 232

Conread position: 9-511
Cow position: chr14:3080196-3079694 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 293
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 10-547
Cow position: chr14:3080447-3079910 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 307
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 534, 529

Conread position: 10-560
Cow position: chr14:3128211-3127661 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 325
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 171, 166

Conread position: 11-576
Cow position: chr14:25876971-25877536 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 349
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 189, 193

Conread position: 11-577
Cow position: chr14:3155878-3156444 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 193

Conread position: 12-386
Cow position: chr14:25877476-25877850 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 231
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 31, 21

Conread position: 12-388
Cow position: chr14:25860425-25860801 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 227
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 37, 21

Conread position: 12-451
Cow position: chr14:25836784-25837223 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 285
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 55, 68

Conread position: 12-451
Cow position: chr14:25860341-25860780 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 273
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 54, 65

Conread position: 12-464
Cow position: chr14:25877392-25877844 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 288
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 54, 65

Conread position: 12-482
Cow position: chr14:447570-448040 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 288
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 151, 158

Conread position: 12-490
Cow position: chr14:3080277-3079799 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 278
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 12-495
Cow position: chr14:3080781-3080298 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 286
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 169, 164

Conread position: 12-553
Cow position: chr14:25876720-25877261 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 325
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 192, 188

Conread position: 12-555
Cow position: chr14:680708-681251 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 334
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 236, 226

Conread position: 12-558
Cow position: chr14:25895935-25896475 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 319
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 138, 158

Conread position: 12-559
Cow position: chr14:25836364-25836911 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 345
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 86, 79

Conread position: 12-559
Cow position: chr14:25836616-25837163 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 504, 495

Conread position: 12-576
Cow position: chr14:25859921-25860485 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 348
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 54, 73

Conread position: 12-577
Cow position: chr14:25859417-25859982 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 20

Conread position: 12-577
Cow position: chr14:25876468-25877033 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 420, 415

Conread position: 12-579
Cow position: chr14:25783493-25784060 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-579
Cow position: chr14:25876888-25877455 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 340
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 62, 67

Conread position: 12-579
Cow position: chr14:25877140-25877707 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 352
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 24, 20

Conread position: 12-580
Cow position: chr14:25836196-25836764 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 154

Conread position: 12-580
Cow position: chr14:25859753-25860321 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 339
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 185, 193

Conread position: 12-580
Cow position: chr14:25876804-25877372 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 342
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 138, 154

Conread position: 12-580
Cow position: chr14:25877056-25877624 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 337
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 108, 103

Conread position: 12-586
Cow position: chr14:25795033-25794459 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 69

Conread position: 12-587
Cow position: chr14:25876636-25877211 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 65

Conread position: 12-595
Cow position: chr14:25836112-25836695 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 78

Conread position: 21-578
Cow position: chr14:25836541-25837098 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 345
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 53, 59

Conread position: 22-534
Cow position: chr14:25860267-25860779 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 313
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 52, 61

Conread position: 22-578
Cow position: chr14:25860183-25860739 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 337
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 160, 153

Conread position: 22-578
Cow position: chr14:25877234-25877790 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 331
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 326, 312

Conread position: 29-578
Cow position: chr14:25835709-25836258 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 328
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 62, 82

Conread position: 29-579
Cow position: chr14:25794764-25794213 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 42

Conread position: 30-554
Cow position: chr14:25836298-25836822 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 50

Conread position: 35-322
Cow position: chr14:3155413-3155700 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 185
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 230, 217

Conread position: 35-480
Cow position: chr14:25910835-25911278 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 271
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 169, 161

Conread position: 35-484
Cow position: chr14:3127766-3127317 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 265
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 169, 165

Conread position: 35-534
Cow position: chr14:25836723-25837222 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 315
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 52, 36

Conread position: 35-554
Cow position: chr14:25860112-25860631 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 319
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 29, 42

Conread position: 35-554
Cow position: chr14:25877331-25877850 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 323
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 44, 33

Conread position: 35-559
Cow position: chr14:25835799-25836323 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 314
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 31, 42

Conread position: 35-559
Cow position: chr14:25836051-25836575 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 398, 392

Conread position: 35-559
Cow position: chr14:25859188-25859712 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 332
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 47, 40

Conread position: 35-560
Cow position: chr14:25795262-25794737 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 35-594
Cow position: chr14:3101164-3100610 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 335
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 115, 103

Conread position: 36-496
Cow position: chr14:3100832-3100371 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 283
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 121, 135

Conread position: 36-556
Cow position: chr14:25783349-25783869 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 122

Conread position: 36-580
Cow position: chr14:25860029-25860573 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 326
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 80, 67

Conread position: 36-595
Cow position: chr14:25859525-25860084 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 342
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 168, 164

Conread position: 39-580
Cow position: chr14:680567-681108 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 321
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 304, 280

Conread position: 42-547
Cow position: chr14:680654-681159 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 298
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 391, 387

Conread position: 57-490
Cow position: chr14:680837-681270 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 260
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 208, 198

Conread position: 86-507
Cow position: chr14:680194-680614 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 249
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 179, 169

Conread position: 87-587
Cow position: chr14:25795462-25794962 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 163

Conread position: 95-579
Cow position: chr14:25783324-25783808 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 95-586
Cow position: chr14:3155878-3156369 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 302
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 104, 109

Conread position: 96-593
Cow position: chr14:25859333-25859830 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 303
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 85, 78

Conread position: 104-599
Cow position: chr14:25859173-25859668 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 296
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 93, 108

Conread position: 105-587
Cow position: chr14:25876225-25876707 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 293
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 70, 63

Conread position: 112-451
Cow position: chr14:3155406-3155745 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 214
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 87, 92

Conread position: 140-586
Cow position: chr14:3155269-3155712 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 275
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 105, 94

Conread position: 165-494
Cow position: chr14:447555-447884 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 205
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 98, 90

Conread position: 198-508
Cow position: chr14:3155409-3155718 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 201
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 50, 6

Conread position: 256-579
Cow position: chr14:25783317-25783640 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 108

Conread position: 339-578
Cow position: chr14:25783316-25783555 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 156
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.