Cow genome map

Conread name: rspc010_k18.y1

Conread position: 1-299
Cow position: chr19:23597420-23597716 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 192
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 280, 0

Conread position: 1-555
Cow position: chr19:23613823-23614377 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-560
Cow position: chr19:14959680-14959132 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 348
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 43, 28

Conread position: 1-560
Cow position: chr19:23613487-23614046 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 87

Conread position: 1-560
Cow position: chr19:23614411-23614970 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 203

Conread position: 1-587
Cow position: chr19:14940043-14940629 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 199

Conread position: 2-437
Cow position: chr19:43570084-43569653 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 28

Conread position: 3-322
Cow position: chr19:23650115-23650434 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 217
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 196, 201

Conread position: 3-407
Cow position: chr19:14916020-14916419 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 253
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 61, 72

Conread position: 3-485
Cow position: chr19:23649947-23650429 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-518
Cow position: chr19:23614581-23615096 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 201

Conread position: 3-548
Cow position: chr19:23649863-23650408 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 329
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 83, 68

Conread position: 3-551
Cow position: chr19:23597170-23597718 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 72

Conread position: 3-560
Cow position: chr19:14960084-14959543 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 349
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 177, 173

Conread position: 3-560
Cow position: chr19:23613657-23614214 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 231

Conread position: 3-575
Cow position: chr19:23613741-23614312 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 201

Conread position: 3-576
Cow position: chr19:23597086-23597659 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 201

Conread position: 3-586
Cow position: chr19:14940381-14940964 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 5-557
Cow position: chr19:43570249-43569699 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 70

Conread position: 7-534
Cow position: chr19:14960414-14959889 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 158

Conread position: 7-569
Cow position: chr19:14959828-14959283 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 358
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 90, 13

Conread position: 8-560
Cow position: chr19:23613410-23613962 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 508, 497

Conread position: 9-283
Cow position: chr19:14959101-14958827 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 176
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 37, 24

Conread position: 9-453
Cow position: chr19:23650037-23650481 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 282
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 190, 195

Conread position: 9-553
Cow position: chr19:14940219-14940763 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 192

Conread position: 9-555
Cow position: chr19:14959422-14958891 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 334
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 88, 77

Conread position: 9-580
Cow position: chr19:23649785-23650356 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 191

Conread position: 10-362
Cow position: chr19:23614756-23615108 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 226
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 10-385
Cow position: chr19:20635401-20635026 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 243
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 69, 77

Conread position: 10-560
Cow position: chr19:23614084-23614634 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 224

Conread position: 11-459
Cow position: chr19:14960158-14959714 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 11

Conread position: 11-555
Cow position: chr19:23649451-23649995 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 187

Conread position: 11-575
Cow position: chr19:14940305-14940868 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 117

Conread position: 11-577
Cow position: chr19:14940139-14940703 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 533, 11

Conread position: 11-577
Cow position: chr19:23614505-23615071 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 11-579
Cow position: chr19:14940473-14941041 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 160

Conread position: 11-593
Cow position: chr19:20677596-20678178 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 193

Conread position: 12-371
Cow position: chr19:14948401-14948042 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 222
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 289, 278

Conread position: 12-553
Cow position: chr19:23613918-23614459 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 192

Conread position: 12-559
Cow position: chr19:23649704-23650251 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 192

Conread position: 12-597
Cow position: chr19:23613582-23614167 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 188

Conread position: 13-439
Cow position: chr19:14940645-14941069 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 9

Conread position: 15-580
Cow position: chr19:23614175-23614738 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 8

Conread position: 22-594
Cow position: chr19:20677859-20678431 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 11

Conread position: 24-548
Cow position: chr19:20678281-20678802 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 9

Conread position: 24-555
Cow position: chr19:20635639-20635108 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 176

Conread position: 29-559
Cow position: chr19:14939986-14940517 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 172

Conread position: 29-560
Cow position: chr19:20677446-20677977 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 30-485
Cow position: chr19:14948466-14948012 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 279
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 167, 66

Conread position: 30-589
Cow position: chr19:20677951-20678510 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 54

Conread position: 35-361
Cow position: chr19:14940749-14941075 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 213
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 164, 169

Conread position: 35-370
Cow position: chr19:14959153-14958824 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 220
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 34, 0

Conread position: 35-446
Cow position: chr19:23614697-23615108 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 263
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 164, 169

Conread position: 35-451
Cow position: chr19:14959237-14958827 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 259
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 179, 120

Conread position: 35-553
Cow position: chr19:20677536-20678054 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 49

Conread position: 35-553
Cow position: chr19:23649559-23650077 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 373, 388

Conread position: 35-556
Cow position: chr19:23649643-23650164 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 53

Conread position: 35-559
Cow position: chr19:20635544-20635020 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 477, 482

Conread position: 35-560
Cow position: chr19:20678124-20678649 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 49

Conread position: 35-580
Cow position: chr19:23649307-23649852 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 331
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 45, 31

Conread position: 36-492
Cow position: chr19:14915967-14916420 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 298
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 40, 132

Conread position: 36-518
Cow position: chr19:14940582-14941064 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 168

Conread position: 36-559
Cow position: chr19:23613354-23613877 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 168

Conread position: 36-560
Cow position: chr19:23614026-23614550 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 168

Conread position: 36-593
Cow position: chr19:20678041-20678598 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 51

Conread position: 42-576
Cow position: chr19:20678215-20678746 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 29

Conread position: 63-580
Cow position: chr19:23597062-23597579 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 95-580
Cow position: chr19:14960410-14959927 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 195

Conread position: 97-594
Cow position: chr19:43570398-43569912 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 6

Conread position: 99-534
Cow position: chr19:14959257-14958828 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 290
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 21, 13

Conread position: 107-559
Cow position: chr19:20677440-20677892 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 284
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 107-577
Cow position: chr19:20635640-20635170 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 93

Conread position: 107-580
Cow position: chr19:14915955-14916424 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 309
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 55, 13

Conread position: 114-530
Cow position: chr19:14948466-14948051 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 258
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 90, 62

Conread position: 119-556
Cow position: chr19:20635711-20635275 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 274
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 85, 11

Conread position: 120-597
Cow position: chr19:23613354-23613831 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 168-559
Cow position: chr19:23596833-23597222 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 234
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 17, 170

Conread position: 175-594
Cow position: chr19:14960414-14959997 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 247

Conread position: 179-588
Cow position: chr19:23649285-23649692 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 241
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 85, 19

Conread position: 191-578
Cow position: chr19:20677440-20677827 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 243
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 197-577
Cow position: chr19:14939986-14940367 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 249-559
Cow position: chr19:14960424-14960116 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 257

Conread position: 264-580
Cow position: chr19:14948484-14948169 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 202
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 108, 80

Conread position: 275-595
Cow position: chr19:20635640-20635320 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 212
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 86, 76

Conread position: 299-587
Cow position: chr19:14940005-14940293 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 188
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 244, 240

Conread position: 329-560
Cow position: chr19:23613311-23613542 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 159
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 42, 22

Conread position: 333-560
Cow position: chr19:14960424-14960197 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 162
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 83, 72

Show alignments to all cow chromosomes.