Cow genome map

Conread name: rspc010_k18.y1

Conread position: 1-441
Cow position: chr22:12418890-12418450 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 256
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-449
Cow position: chr22:12431015-12430567 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 281
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 149, 156

Conread position: 1-450
Cow position: chr22:12458219-12457770 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 285
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 203, 198

Conread position: 1-491
Cow position: chr22:12432443-12431953 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 166

Conread position: 1-554
Cow position: chr22:12385531-12384976 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 168

Conread position: 1-555
Cow position: chr22:12399455-12398901 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 82

Conread position: 1-559
Cow position: chr22:12499091-12499649 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 146

Conread position: 1-576
Cow position: chr22:12399623-12399048 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 250

Conread position: 1-596
Cow position: chr22:12475916-12475321 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 199

Conread position: 1-596
Cow position: chr22:12499343-12499938 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 199

Conread position: 2-368
Cow position: chr22:12499596-12499962 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 235
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 228, 234

Conread position: 2-492
Cow position: chr22:12499428-12499918 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 198

Conread position: 2-534
Cow position: chr22:12475831-12475299 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 198

Conread position: 2-560
Cow position: chr22:12399706-12399148 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 492, 506

Conread position: 3-288
Cow position: chr22:12458049-12457764 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 181
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 3-371
Cow position: chr22:12385275-12384907 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 239
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 17, 23

Conread position: 3-469
Cow position: chr22:12475746-12475279 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 76

Conread position: 3-542
Cow position: chr22:12399285-12398746 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 114

Conread position: 3-575
Cow position: chr22:12399789-12399218 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 197

Conread position: 3-587
Cow position: chr22:12431685-12431101 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 241

Conread position: 3-594
Cow position: chr22:12458385-12457794 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 256

Conread position: 5-575
Cow position: chr22:12431348-12430778 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 201

Conread position: 5-580
Cow position: chr22:12419323-12418731 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 338
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 226, 0

Conread position: 8-361
Cow position: chr22:11641086-11641439 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 225
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 119, 110

Conread position: 8-556
Cow position: chr22:11640834-11641382 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 168

Conread position: 8-559
Cow position: chr22:12476243-12475694 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 14

Conread position: 8-559
Cow position: chr22:12499016-12499565 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 14

Conread position: 8-597
Cow position: chr22:12399532-12398943 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 192

Conread position: 9-293
Cow position: chr22:11641171-11641453 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 188
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 144, 161

Conread position: 9-560
Cow position: chr22:11640667-11641218 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 191

Conread position: 10-492
Cow position: chr22:12431258-12430776 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 77

Conread position: 10-555
Cow position: chr22:12385690-12385143 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 27

Conread position: 10-579
Cow position: chr22:12476411-12475842 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 16

Conread position: 10-579
Cow position: chr22:12498848-12499417 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 16

Conread position: 11-209
Cow position: chr22:11641257-11641455 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 134
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 63, 76

Conread position: 11-357
Cow position: chr22:11666594-11666940 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 220
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 81, 73

Conread position: 11-406
Cow position: chr22:11701248-11701643 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 252
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 81, 73

Conread position: 11-546
Cow position: chr22:14467954-14468488 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 337
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 9, 32

Conread position: 11-555
Cow position: chr22:12498933-12499477 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 223

Conread position: 11-587
Cow position: chr22:46654076-46654652 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 337
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 57, 76

Conread position: 11-597
Cow position: chr22:12431593-12431007 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 365
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 149, 170

Conread position: 12-288
Cow position: chr22:12499690-12499966 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 181
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 187, 192

Conread position: 12-406
Cow position: chr22:11666511-11666905 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 240
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 164, 156

Conread position: 12-485
Cow position: chr22:12432012-12431539 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 301
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 229, 238

Conread position: 12-495
Cow position: chr22:12418963-12418480 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 295
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 188, 193

Conread position: 12-497
Cow position: chr22:11701165-11701650 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 292
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 164, 156

Conread position: 12-542
Cow position: chr22:12458292-12457763 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 222

Conread position: 12-545
Cow position: chr22:11640922-11641454 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 188

Conread position: 12-553
Cow position: chr22:12476325-12475784 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 222

Conread position: 12-559
Cow position: chr22:11640754-11641301 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 253

Conread position: 12-560
Cow position: chr22:12432264-12431716 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 349
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 56, 71

Conread position: 12-580
Cow position: chr22:12431424-12430856 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 78

Conread position: 13-495
Cow position: chr22:14429797-14430277 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 9

Conread position: 13-553
Cow position: chr22:12458627-12458087 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 221

Conread position: 15-441
Cow position: chr22:46654415-46654842 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 259
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 8, 63

Conread position: 15-529
Cow position: chr22:12544564-12545078 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 304
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 188, 181

Conread position: 15-557
Cow position: chr22:46654247-46654790 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 333
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 8, 73

Conread position: 22-560
Cow position: chr22:14429720-14430258 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 11

Conread position: 23-485
Cow position: chr22:12432337-12431875 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 299
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 55, 48

Conread position: 23-560
Cow position: chr22:12432169-12431632 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 330
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 55, 50

Conread position: 24-599
Cow position: chr22:12499198-12499772 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 221

Conread position: 29-551
Cow position: chr22:11666444-11666965 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 319
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 150, 137

Conread position: 30-558
Cow position: chr22:11701099-11701627 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 323
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 149, 137

Conread position: 30-560
Cow position: chr22:12432498-12431968 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 337
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 52, 37

Conread position: 35-451
Cow position: chr22:12385327-12384911 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 268
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 162, 170

Conread position: 35-481
Cow position: chr22:46654352-46654798 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 282
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 69, 64

Conread position: 35-509
Cow position: chr22:46654184-46654658 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 306
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 69, 64

Conread position: 35-553
Cow position: chr22:14429901-14430419 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 319
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 71, 42

Conread position: 35-556
Cow position: chr22:14429985-14430506 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 336
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 71, 42

Conread position: 35-556
Cow position: chr22:14430405-14430926 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 327
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 62, 48

Conread position: 35-557
Cow position: chr22:14468062-14468584 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 39

Conread position: 35-559
Cow position: chr22:12431737-12431213 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 330
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 136, 115

Conread position: 35-559
Cow position: chr22:12458521-12457997 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 461, 472

Conread position: 35-581
Cow position: chr22:12476050-12475504 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 214

Conread position: 35-587
Cow position: chr22:12431905-12431353 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 164

Conread position: 36-490
Cow position: chr22:12419023-12418569 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 274
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 229, 224

Conread position: 36-493
Cow position: chr22:14442048-14442505 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 275
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 34, 46

Conread position: 36-534
Cow position: chr22:12385410-12384912 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 306
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 37, 43

Conread position: 36-556
Cow position: chr22:14429650-14430170 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 330
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 55, 61

Conread position: 36-559
Cow position: chr22:12431148-12430625 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 164

Conread position: 36-578
Cow position: chr22:14430322-14430864 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 342
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 57, 48

Conread position: 36-580
Cow position: chr22:46654017-46654561 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 340
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 110, 133

Conread position: 37-578
Cow position: chr22:12432071-12431530 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 50

Conread position: 38-580
Cow position: chr22:12399838-12399296 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 162

Conread position: 45-566
Cow position: chr22:14441889-14442410 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 310
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 42, 24

Conread position: 55-580
Cow position: chr22:12458417-12457892 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 369

Conread position: 78-565
Cow position: chr22:14467936-14468424 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 301
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 18, 123

Conread position: 80-569
Cow position: chr22:11640654-11641143 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 154

Conread position: 95-580
Cow position: chr22:12385689-12385202 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 16

Conread position: 103-559
Cow position: chr22:12458621-12458165 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 102

Conread position: 103-559
Cow position: chr22:14429465-14429921 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 285
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 25, 10

Conread position: 105-595
Cow position: chr22:46654002-46654492 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 295
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 99, 95

Conread position: 113-558
Cow position: chr22:11666444-11666889 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 276
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 151, 121

Conread position: 117-553
Cow position: chr22:46653930-46654366 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 266
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 88, 82

Conread position: 120-593
Cow position: chr22:14429650-14430123 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 80

Conread position: 124-595
Cow position: chr22:14441884-14442355 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 281
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 76, 88

Conread position: 130-559
Cow position: chr22:11701115-11701544 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 268
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 118, 104

Conread position: 165-587
Cow position: chr22:11640655-11641077 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 266
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 379, 371

Conread position: 181-594
Cow position: chr22:12458627-12458214 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 261
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 237, 224

Conread position: 199-580
Cow position: chr22:12399923-12399548 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 0

Conread position: 264-589
Cow position: chr22:12432432-12432107 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 218
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 32, 26

Conread position: 298-597
Cow position: chr22:12399908-12399615 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 198
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 68, 0

Conread position: 346-581
Cow position: chr22:12498848-12499083 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 152
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.