Cow genome map
| Conread name: | rspc010_k18.y1 |
| Conread position: | 1-304 |
| Cow position: | chr23:24626445-24626746 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 198, 203 |
| Conread position: | 1-392 |
| Cow position: | chr23:24560417-24560025 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 73, 82 |
| Conread position: | 1-553 |
| Cow position: | chr23:24639437-24639989 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 32 |
| Conread position: | 2-556 |
| Cow position: | chr23:25626420-25626971 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 110 |
| Conread position: | 2-559 |
| Cow position: | chr23:25626252-25626806 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 541, 332 |
| Conread position: | 2-560 |
| Cow position: | chr23:25698686-25698128 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 31 |
| Conread position: | 3-285 |
| Cow position: | chr23:25660458-25660740 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 196, 201 |
| Conread position: | 3-438 |
| Cow position: | chr23:25626586-25627021 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 284 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 196, 201 |
| Conread position: | 3-451 |
| Cow position: | chr23:24560583-24560135 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-475 |
| Cow position: | chr23:24639607-24640079 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 75 |
| Conread position: | 3-490 |
| Cow position: | chr23:25698601-25698114 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 314 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 9, 5 |
| Conread position: | 3-542 |
| Cow position: | chr23:24535990-24535452 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 421, 400 |
| Conread position: | 3-554 |
| Cow position: | chr23:24639355-24639906 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 34 |
| Conread position: | 3-559 |
| Cow position: | chr23:24547275-24546719 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 72 |
| Conread position: | 7-583 |
| Cow position: | chr23:24522758-24522185 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 25 |
| Conread position: | 8-537 |
| Cow position: | chr23:25660211-25660740 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 150 |
| Conread position: | 9-259 |
| Cow position: | chr23:24522423-24522173 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 171, 160 |
| Conread position: | 10-365 |
| Cow position: | chr23:24547016-24546661 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 240 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 140, 152 |
| Conread position: | 10-376 |
| Cow position: | chr23:25626677-25627043 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 270, 281 |
| Conread position: | 10-440 |
| Cow position: | chr23:25698510-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 60, 53 |
| Conread position: | 10-459 |
| Cow position: | chr23:25660297-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 285 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 189, 194 |
| Conread position: | 10-580 |
| Cow position: | chr23:25626092-25626659 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 343 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 187, 194 |
| Conread position: | 11-376 |
| Cow position: | chr23:24560491-24560126 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 189 |
| Conread position: | 11-445 |
| Cow position: | chr23:24547099-24546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 193 |
| Conread position: | 11-598 |
| Cow position: | chr23:24639279-24639866 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 110 |
| Conread position: | 12-392 |
| Cow position: | chr23:24626372-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 226 |
| Conread position: | 12-534 |
| Cow position: | chr23:24560658-24560136 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 225 |
| Conread position: | 22-361 |
| Cow position: | chr23:25724053-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 229, 233 |
| Conread position: | 22-529 |
| Cow position: | chr23:24547172-24546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 306 |
| Conread position: | 35-476 |
| Cow position: | chr23:24626311-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 196 |
| Conread position: | 35-554 |
| Cow position: | chr23:24639555-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 130 |
| Conread position: | 36-349 |
| Cow position: | chr23:24522480-24522167 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 45 |
| Conread position: | 36-368 |
| Cow position: | chr23:24654121-24654453 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 161, 168 |
| Conread position: | 36-492 |
| Cow position: | chr23:25626538-25626991 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 45 |
| Conread position: | 36-580 |
| Cow position: | chr23:24560718-24560174 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 198 |
| Conread position: | 41-387 |
| Cow position: | chr23:24654042-24654388 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 83, 76 |
| Conread position: | 43-587 |
| Cow position: | chr23:24560879-24560335 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 36 |
| Conread position: | 48-559 |
| Cow position: | chr23:24536029-24535518 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 25 |
| Conread position: | 48-580 |
| Cow position: | chr23:24639232-24639764 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 34 |
| Conread position: | 55-445 |
| Cow position: | chr23:25724104-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 23, 8 |
| Conread position: | 55-565 |
| Cow position: | chr23:24547307-24546797 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 8 |
| Conread position: | 57-583 |
| Cow position: | chr23:25660176-25660702 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 335 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 142, 147 |
| Conread position: | 95-553 |
| Cow position: | chr23:25626009-25626467 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 296 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 29, 22 |
| Conread position: | 112-560 |
| Cow position: | chr23:24626304-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 88 |
| Conread position: | 126-448 |
| Cow position: | chr23:24654043-24654365 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 224 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 82, 74 |
| Conread position: | 126-559 |
| Cow position: | chr23:24547320-24546887 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 74 |
| Conread position: | 131-594 |
| Cow position: | chr23:25625961-25626424 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 64, 74 |
| Conread position: | 132-560 |
| Cow position: | chr23:24536029-24535601 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 68 |
| Conread position: | 132-578 |
| Cow position: | chr23:25660167-25660613 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 186 |
| Conread position: | 139-529 |
| Cow position: | chr23:25724104-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 256 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 126, 116 |
| Conread position: | 140-553 |
| Cow position: | chr23:24626251-24626661 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 19 |
| Conread position: | 190-587 |
| Cow position: | chr23:24522825-24522433 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 106, 38 |
| Conread position: | 209-581 |
| Cow position: | chr23:24654042-24654416 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 207, 195 |
| Conread position: | 210-578 |
| Cow position: | chr23:24547320-24546952 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 244 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 206, 195 |
| Conread position: | 216-587 |
| Cow position: | chr23:25660167-25660538 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 211, 189 |
| Conread position: | 222-546 |
| Cow position: | chr23:25724105-25723782 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 127, 122 |
| Conread position: | 252-580 |
| Cow position: | chr23:25698689-25698360 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 5, 25 |
| Conread position: | 262-559 |
| Cow position: | chr23:24639194-24639491 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 187, 193 |
| Conread position: | 279-559 |
| Cow position: | chr23:25660146-25660426 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 229, 210 |
| Conread position: | 279-577 |
| Cow position: | chr23:24626303-24626601 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 263, 255 |
| Conread position: | 285-578 |
| Cow position: | chr23:24547329-24547036 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 129, 121 |
| Conread position: | 288-559 |
| Cow position: | chr23:24654037-24654308 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 300-598 |
| Cow position: | chr23:24536029-24535731 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 243, 239 |
| Conread position: | 307-580 |
| Cow position: | chr23:25724104-25723831 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 237, 229 |
| Conread position: | 332-596 |
| Cow position: | chr23:25625994-25626258 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 168, 157 |
| Conread position: | 347-596 |
| Cow position: | chr23:25698677-25698428 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.