Cow genome map
| Conread name: | rspc010_k18.y1 |
| Conread position: | 1-290 |
| Cow position: | chr25:33127938-33128227 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 196, 203 |
| Conread position: | 1-406 |
| Cow position: | chr25:33305267-33304867 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 68, 81 |
| Conread position: | 1-575 |
| Cow position: | chr25:34713918-34714491 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 351 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 27, 36 |
| Conread position: | 1-594 |
| Cow position: | chr25:34447074-34447667 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 254 |
| Conread position: | 2-392 |
| Cow position: | chr25:34769567-34769179 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 93, 73 |
| Conread position: | 2-517 |
| Cow position: | chr25:23420352-23420867 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 202 |
| Conread position: | 3-277 |
| Cow position: | chr25:23420605-23420879 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-426 |
| Cow position: | chr25:34714172-34714591 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 144, 167 |
| Conread position: | 3-441 |
| Cow position: | chr25:23420437-23420875 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 284 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 45, 24 |
| Conread position: | 3-448 |
| Cow position: | chr25:33127772-33128217 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 284 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 71, 75 |
| Conread position: | 3-529 |
| Cow position: | chr25:34447412-34447927 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 114 |
| Conread position: | 3-535 |
| Cow position: | chr25:34769734-34769202 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 511, 502 |
| Conread position: | 3-556 |
| Cow position: | chr25:33157335-33156783 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 197 |
| Conread position: | 3-587 |
| Cow position: | chr25:33298953-33299537 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 80 |
| Conread position: | 3-589 |
| Cow position: | chr25:34446992-34447578 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 3-594 |
| Cow position: | chr25:34769902-34769311 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 30 |
| Conread position: | 7-556 |
| Cow position: | chr25:33305426-33304884 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 350 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 65, 23 |
| Conread position: | 7-596 |
| Cow position: | chr25:34732466-34731877 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 354 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 190, 205 |
| Conread position: | 8-555 |
| Cow position: | chr25:33157414-33156867 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 192 |
| Conread position: | 8-574 |
| Cow position: | chr25:33298790-33299356 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 336 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-560 |
| Cow position: | chr25:34769980-34769429 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 108 |
| Conread position: | 10-594 |
| Cow position: | chr25:34770147-34769563 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 11-317 |
| Cow position: | chr25:36801689-36801991 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 11-361 |
| Cow position: | chr25:36801605-36801955 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 57, 72 |
| Conread position: | 11-441 |
| Cow position: | chr25:33299465-33299888 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 148, 139 |
| Conread position: | 11-560 |
| Cow position: | chr25:33299213-33299762 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 50 |
| Conread position: | 11-587 |
| Cow position: | chr25:34770062-34769486 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 189 |
| Conread position: | 11-594 |
| Cow position: | chr25:34447252-34447827 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 11-594 |
| Cow position: | chr25:36800693-36801276 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 353 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 184, 193 |
| Conread position: | 12-560 |
| Cow position: | chr25:33157494-33156946 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 65 |
| Conread position: | 24-559 |
| Cow position: | chr25:36801366-36801901 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 337 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 71, 47 |
| Conread position: | 24-597 |
| Cow position: | chr25:33298554-33299127 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 354 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 48, 62 |
| Conread position: | 35-225 |
| Cow position: | chr25:34433022-34433212 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 33, 44 |
| Conread position: | 35-362 |
| Cow position: | chr25:366727-367054 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 160, 168 |
| Conread position: | 35-368 |
| Cow position: | chr25:326925-327258 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 45 |
| Conread position: | 35-484 |
| Cow position: | chr25:36800885-36801334 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 88, 82 |
| Conread position: | 35-485 |
| Cow position: | chr25:33299321-33299771 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 40 |
| Conread position: | 35-485 |
| Cow position: | chr25:36801461-36801911 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 291 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 35-487 |
| Cow position: | chr25:36801545-36801993 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 279 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 161, 169 |
| Conread position: | 35-534 |
| Cow position: | chr25:33144935-33145431 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 312 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 89, 77 |
| Conread position: | 35-552 |
| Cow position: | chr25:34433607-34434110 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 312 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 17, 24 |
| Conread position: | 35-553 |
| Cow position: | chr25:36800801-36801319 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 318 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 35-554 |
| Cow position: | chr25:33298901-33299420 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 321 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 145, 133 |
| Conread position: | 35-559 |
| Cow position: | chr25:33298481-33299005 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 323 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 162, 169 |
| Conread position: | 35-559 |
| Cow position: | chr25:33298649-33299173 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 329 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 32, 52 |
| Conread position: | 35-559 |
| Cow position: | chr25:33298733-33299257 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 335 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 29, 49 |
| Conread position: | 35-559 |
| Cow position: | chr25:36801053-36801565 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 395, 284 |
| Conread position: | 35-560 |
| Cow position: | chr25:33299153-33299678 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 43 |
| Conread position: | 35-560 |
| Cow position: | chr25:34769786-34769261 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-574 |
| Cow position: | chr25:33299069-33299608 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 337 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 47, 36 |
| Conread position: | 36-509 |
| Cow position: | chr25:34714037-34714509 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 282 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 37-490 |
| Cow position: | chr25:33305958-33305513 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 35, 14 |
| Conread position: | 47-532 |
| Cow position: | chr25:33127732-33128217 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 157 |
| Conread position: | 47-555 |
| Cow position: | chr25:33144863-33145368 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 299 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 288, 178 |
| Conread position: | 57-397 |
| Cow position: | chr25:34732164-34731824 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 49, 26 |
| Conread position: | 57-559 |
| Cow position: | chr25:34446962-34447464 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 309 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 63, 57 |
| Conread position: | 81-589 |
| Cow position: | chr25:36801339-36801847 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 310 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 39, 31 |
| Conread position: | 95-532 |
| Cow position: | chr25:34433502-34433935 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 29, 22 |
| Conread position: | 119-307 |
| Cow position: | chr25:34433022-34433211 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 119-533 |
| Cow position: | chr25:23420385-23420799 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 77 |
| Conread position: | 119-596 |
| Cow position: | chr25:33144851-33145325 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 167, 160 |
| Conread position: | 120-584 |
| Cow position: | chr25:34713869-34714333 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 276 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 29, 41 |
| Conread position: | 127-580 |
| Cow position: | chr25:33157463-33157010 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 417, 412 |
| Conread position: | 131-574 |
| Cow position: | chr25:33127732-33128175 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 284 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 73, 69 |
| Conread position: | 139-560 |
| Cow position: | chr25:23420321-23420742 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 66 |
| Conread position: | 141-451 |
| Cow position: | chr25:326947-327257 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 141-547 |
| Cow position: | chr25:34446962-34447368 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 402, 398 |
| Conread position: | 164-405 |
| Cow position: | chr25:34432983-34433224 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 40, 30 |
| Conread position: | 165-481 |
| Cow position: | chr25:18642207-18641888 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 178-481 |
| Cow position: | chr25:34732127-34731824 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 26, 19 |
| Conread position: | 184-555 |
| Cow position: | chr25:33306395-33306029 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 198-555 |
| Cow position: | chr25:33298476-33298833 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 29 |
| Conread position: | 198-580 |
| Cow position: | chr25:34732610-34732229 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 346, 6 |
| Conread position: | 207-555 |
| Cow position: | chr25:346454-346802 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 203, 212 |
| Conread position: | 215-594 |
| Cow position: | chr25:33127732-33128111 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 362, 350 |
| Conread position: | 222-555 |
| Cow position: | chr25:23420320-23420653 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 249-587 |
| Cow position: | chr25:18642207-18641866 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 80, 87 |
| Conread position: | 264-560 |
| Cow position: | chr25:33305421-33305128 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 228, 17 |
| Conread position: | 264-577 |
| Cow position: | chr25:33157494-33157181 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 280, 275 |
| Conread position: | 268-487 |
| Cow position: | chr25:34433003-34433222 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 145, 129 |
| Conread position: | 374-554 |
| Cow position: | chr25:34433025-34433205 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.